View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20836_high_3 (Length: 357)
Name: NF20836_high_3
Description: NF20836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20836_high_3 |
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| [»] scaffold0534 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 131
Target Start/End: Complemental strand, 43313663 - 43313539
Alignment:
| Q |
7 |
gtgagatgaacactaaagagaagataaaagcttctcgtaagaatctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttataaaag |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
43313663 |
gtgaaatgaacactaaagagaagataaaagcttctcgtaagaagctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttctaaaag |
43313564 |
T |
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| Q |
107 |
atttaaacaggtgactatcatgtat |
131 |
Q |
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| T |
43313563 |
atttaaacaggtgactatcatgtat |
43313539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 34743667 - 34743791
Alignment:
| Q |
7 |
gtgagatgaacactaaagagaagataaaagcttctcgtaagaatctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttataaaag |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
34743667 |
gtgaaatgaacactaaagagaagataaaagcttctcgtaagaagctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttctaaaag |
34743766 |
T |
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| Q |
107 |
atttaaacaggtgactatcatgtat |
131 |
Q |
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| T |
34743767 |
atttaaacaggtgactatcatgtat |
34743791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 4e-57; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 21531478 - 21531602
Alignment:
| Q |
7 |
gtgagatgaacactaaagagaagataaaagcttctcgtaagaatctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttataaaag |
106 |
Q |
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| T |
21531478 |
gtgaaatgaacactaaagagaagataaaagcttctcgtaagaagctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttctaaaag |
21531577 |
T |
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| Q |
107 |
atttaaacaggtgactatcatgtat |
131 |
Q |
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| T |
21531578 |
atttaaacaggtgactatcatgtat |
21531602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 7 - 131
Target Start/End: Original strand, 35167419 - 35167543
Alignment:
| Q |
7 |
gtgagatgaacactaaagagaagataaaagcttctcgtaagaatctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttataaaag |
106 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
35167419 |
gtgaaatgaacactaaagagaagataaaagcttctcgtaagaagctagacgatgggattgtactgtggaaagttgggaagtatgaaagagcttctaaaag |
35167518 |
T |
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| Q |
107 |
atttaaacaggtgactatcatgtat |
131 |
Q |
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| T |
35167519 |
atttaaacaggtgactatcatgtat |
35167543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 236 - 336
Target Start/End: Complemental strand, 41819157 - 41819057
Alignment:
| Q |
236 |
aattccatagtttaattaacagtctcataattcatatgcagtactatttgaaaattgtttttggctttaacaaaaatcagttctcagaacttctgatgat |
335 |
Q |
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||||||||||| |||| ||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||| |
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| T |
41819157 |
aattccatagtataatcgacagtctcataattcatatgcagtactatttgaaagctgtttttggtttcaacaaaaatcagttctcagaacttctgatgat |
41819058 |
T |
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| Q |
336 |
g |
336 |
Q |
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| T |
41819057 |
g |
41819057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 270 - 336
Target Start/End: Complemental strand, 41825734 - 41825668
Alignment:
| Q |
270 |
tatgcagtactatttgaaaattgtttttggctttaacaaaaatcagttctcagaacttctgatgatg |
336 |
Q |
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| T |
41825734 |
tatgcagtactatttgaaagctgtttttggttttaacaaaaatcagttctcagaacttctgatgatg |
41825668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0534 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: scaffold0534
Description:
Target: scaffold0534; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 7 - 75
Target Start/End: Complemental strand, 11576 - 11508
Alignment:
| Q |
7 |
gtgagatgaacactaaagagaagataaaagcttctcgtaagaatctagacgatgggattgtactgtgga |
75 |
Q |
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| T |
11576 |
gtgaaatgaacactaaagagaagataaaagcttctcgtaagaagctagacgatgggattgtactgtgga |
11508 |
T |
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