View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20836_high_5 (Length: 341)
Name: NF20836_high_5
Description: NF20836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20836_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 13 - 316
Target Start/End: Original strand, 7126683 - 7126986
Alignment:
| Q |
13 |
tccttagctggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggtataccttgatacagtttgcaagaatgttagatg |
112 |
Q |
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| T |
7126683 |
tccttagctggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggtataccttgatacagtttgcaagaatgttagatg |
7126782 |
T |
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| Q |
113 |
atattagttaaatgtgcttcaaaatgttaggttgactggttagcacgcgtctgcatcttgacattattctattcgagtaattctttcataccttaacttg |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7126783 |
atattagttaaatgtgcttcaaaatgttaggttgactggttagcacgcgtctgcatcttgacattattctattcgtgtaattctttcataccttaacttg |
7126882 |
T |
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| Q |
213 |
gcatattttgatgcattatttttgttttgtttccgatatgcttgcatgatttatatgttgatttggttatttctaaatttaagatacaacttcactaaac |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7126883 |
gcatattttgatgcattatttttgttttgtttccgatatgcttgcatgatttatatgttgatttggttatttctaaatttaagatacaacttcactaaac |
7126982 |
T |
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| Q |
313 |
tgat |
316 |
Q |
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|||| |
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| T |
7126983 |
tgat |
7126986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 21 - 142
Target Start/End: Complemental strand, 7103585 - 7103464
Alignment:
| Q |
21 |
tggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggtataccttgatacagtttgcaagaatgttagatgatattagt |
120 |
Q |
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| T |
7103585 |
tggttgctagagcttactgatatcaaatcattgaaaatcagttcggacactcttcaggtataccttaatacagtatgcaagtatgttagaagatattaat |
7103486 |
T |
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| Q |
121 |
taaatgtgcttcaaaatgttag |
142 |
Q |
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| T |
7103485 |
tatatgtgcattaaaatgttag |
7103464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 5369224 - 5369285
Alignment:
| Q |
18 |
agctggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggt |
79 |
Q |
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|||||| |||||||||||||| ||| |||| ||||||| |||||||| |||||||||||||| |
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| T |
5369224 |
agctggctgcaagagcttgctaatatcaaatcattgacagtctcttctaatactcttcaggt |
5369285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 5374960 - 5375021
Alignment:
| Q |
18 |
agctggttgcaagagcttgctgataccaaaacattgaccgtctcttcgaatactcttcaggt |
79 |
Q |
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|||||| ||| |||||||||| ||| |||| |||| || |||||||| |||||||||||||| |
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| T |
5374960 |
agctggctgctagagcttgctaatatcaaatcattaacagtctcttctaatactcttcaggt |
5375021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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