View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20836_high_8 (Length: 334)
Name: NF20836_high_8
Description: NF20836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20836_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 9 - 312
Target Start/End: Complemental strand, 44467540 - 44467237
Alignment:
| Q |
9 |
accacagacttataacaacaataacacagttgctgcatctttgtctatatctcagcaacattcctactccaacagcaatagtgtggattataataactcc |
108 |
Q |
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| T |
44467540 |
accacagacttataacaacaataacacagttgctgcatctttgtctgtatctcagcaacattcctactccaacagcaatagtgtggattataataactcc |
44467441 |
T |
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| Q |
109 |
tccctctacatggattcaaaggatgatgctacaaatcctaatttgtggcttcagtgcccttacacaaataataatagcagttcaatagcaatgcaacctc |
208 |
Q |
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| T |
44467440 |
tccctctacatggattcaaaagatgatgctacaaatcctaatttgtggcttcagtgcccttacacaaataataatagcagttcaatagcaatgcaacctc |
44467341 |
T |
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| Q |
209 |
ataaattggttacctcagagtcgcagccactatcatctgtccaacaaggagttgttgaagataattatgatgatgtccattcattgttcgatacagttga |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||| |
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| T |
44467340 |
ataaattggttacctcagagtcgcagccactatcatctgtccaacaaggagttgttgaagataattatgatgagatgcattcatttttcgatacagttga |
44467241 |
T |
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| Q |
309 |
tgat |
312 |
Q |
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|||| |
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| T |
44467240 |
tgat |
44467237 |
T |
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