View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20837_high_3 (Length: 346)

Name: NF20837_high_3
Description: NF20837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20837_high_3
NF20837_high_3
[»] chr8 (6 HSPs)
chr8 (30-332)||(29290133-29290435)
chr8 (159-329)||(29312556-29312726)
chr8 (75-260)||(29359131-29359316)
chr8 (149-293)||(29344015-29344159)
chr8 (160-199)||(29235986-29236025)
chr8 (160-199)||(29280719-29280758)
[»] chr3 (1 HSPs)
chr3 (163-194)||(43813654-43813685)


Alignment Details
Target: chr8 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 30 - 332
Target Start/End: Complemental strand, 29290435 - 29290133
Alignment:
Q  30 cctctcacatcataacaacctggtttgtttgctccatattcagggtctggtaggtcaatccaaatgttttcagaattaactgcaacttgcatattcctaa 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29290435 cctctcacatcataacaacctggtttgtttgctccatattcagggtctggtaggtcaatccaaatgttttcagaattaactgcaacttgcatattcctaa 29290336  T
Q  130 tatatgcagcttttttaaaacgtcctgaatcaaaatgtccactacccatttgggtggaagtatgaaacccagttgtatttaaattgagaacttgtccacc 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29290335 tatatgcagcttttttaaaacgtcctgaatcaaaatgtccactacccatttgggtggaagtatgaaacccagttgtatttaaattgagaacttgtccacc 29290236  T
Q  230 aaattgagcaaaatctccttcaccctgtaatcttttgaataaggaagaaggccaatagccaataatatctccattcccatattcaagccaccaatgccca 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29290235 aaattgagcaaaatctccttcaccctgtaatcttttgaataaggaagaaggccaatagccaataatatctccattcccatattcaagccaccaatgccca 29290136  T
Q  330 ttc 332  Q
    |||    
T  29290135 ttc 29290133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 159 - 329
Target Start/End: Complemental strand, 29312726 - 29312556
Alignment:
Q  159 tcaaaatgtccactacccatttgggtggaagtatgaaacccagttgtatttaaattgagaacttgtccaccaaattgagcaaaatctccttcaccctgta 258  Q
    |||||||||||||||||||||||||||| ||||||| | || ||| | |||||||||||||||| ||||||||||| | ||| || | ||||||||| ||    
T  29312726 tcaaaatgtccactacccatttgggtggtagtatgagatcctgttctctttaaattgagaacttctccaccaaattcaacaatatatgcttcacccttta 29312627  T
Q  259 atcttttgaataaggaagaaggccaatagccaataatatctccattcccatattcaagccaccaatgccca 329  Q
    ||  | |||| ||||  |  ||||||||||||| || || ||||   ||||||||||||||||||| ||||    
T  29312626 attctgtgaacaaggtggctggccaatagccaagaaaatttccagatccatattcaagccaccaattccca 29312556  T

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Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 260
Target Start/End: Complemental strand, 29359316 - 29359131
Alignment:
Q  75 tctggtaggtcaatccaaatgttttcagaattaactgcaacttgcatattcctaatatatgcagcttttttaaaacgtcctgaatcaaaatgtccactac 174  Q
    ||||| || ||||||||  |||||| |  |||||||| |||||||||||||||||||||||||| |||| || |||    ||| | ||||| ||||||||    
T  29359316 tctggcagatcaatccatgtgtttttaacattaactgaaacttgcatattcctaatatatgcagattttctataacccagtgattgaaaatttccactac 29359217  T
Q  175 ccatttgggtggaagtatgaaacccagttgtatttaaattgagaacttgtccaccaaattgagcaaaatctccttcaccctgtaat 260  Q
    |||||||||| | ||||||| |||| | | |  ||||||| || |||| |||||||||||||||||||| | ||||||||| ||||    
T  29359216 ccatttgggtagtagtatgagaccctgatctcattaaattcagtacttctccaccaaattgagcaaaatatgcttcaccctttaat 29359131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 293
Target Start/End: Complemental strand, 29344159 - 29344015
Alignment:
Q  149 acgtcctgaatcaaaatgtccactacccatttgggtggaagtatgaaacccagttgtatttaaattgagaacttgtccaccaaattgagcaaaatctcct 248  Q
    |||||||||  |||||||||||||||||||||  || || ||||||  ||| | ||  ||||||||||  |||| ||| || |||| |||||||| | ||    
T  29344159 acgtcctgatacaaaatgtccactacccatttcagttgatgtatgagcccctgatggctttaaattgaacacttctccgccgaattcagcaaaatatgct 29344060  T
Q  249 tcaccctgtaatcttttgaataaggaagaaggccaatagccaata 293  Q
    ||||||| ||||  | |||| |||||||  |||||||||||||||    
T  29344059 tcaccctttaattctgtgaacaaggaagctggccaatagccaata 29344015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 29236025 - 29235986
Alignment:
Q  160 caaaatgtccactacccatttgggtggaagtatgaaaccc 199  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  29236025 caaaatgtccactacccatttgggtggaagtatgagaccc 29235986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 29280758 - 29280719
Alignment:
Q  160 caaaatgtccactacccatttgggtggaagtatgaaaccc 199  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  29280758 caaaatgtccactacccatttgggtggaagtatgagaccc 29280719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 194
Target Start/End: Original strand, 43813654 - 43813685
Alignment:
Q  163 aatgtccactacccatttgggtggaagtatga 194  Q
    ||||||||||||||||||||||||||||||||    
T  43813654 aatgtccactacccatttgggtggaagtatga 43813685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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