View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20837_high_5 (Length: 302)
Name: NF20837_high_5
Description: NF20837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20837_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 7095513 - 7095251
Alignment:
| Q |
30 |
aaagctcccctaggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaagga |
129 |
Q |
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| T |
7095513 |
aaagctcctctaggtggtaggaagaagaaaagaaatcattatgttgaaggcggtgatgctggaaacagggaagactaaatcaacgaactcatcagaagga |
7095414 |
T |
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| Q |
130 |
tgaattagtttttggcatatcatgttgtgtaagattaattatcaagtttgagatat--ttttccttaagcaataagcattttgttcttatgttttacaac |
227 |
Q |
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| T |
7095413 |
tgaattagtttttggcatatcatgttgtgtaagattaattatcaaggttgagatattgttttccttaagcaataagcattttgttcttatgttttacaac |
7095314 |
T |
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| Q |
228 |
aatacaaatgaagtagttttcatacttttttctctccccatccccaaaaccctactttcccttt |
291 |
Q |
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| T |
7095313 |
aatacaaatgaagtagttttcattcttttttctctccccat-cccaaaaccctactttcccttt |
7095251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 30 - 186
Target Start/End: Complemental strand, 7105343 - 7105187
Alignment:
| Q |
30 |
aaagctcccctaggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaagga |
129 |
Q |
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| T |
7105343 |
aaagctcccctaggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaagga |
7105244 |
T |
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| Q |
130 |
tgaattagtttttggcatatcatgttgtgtaagattaattatcaagtttgagatatt |
186 |
Q |
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| T |
7105243 |
tgaattagtttttggcatatcatgttgtgtaagattaattatcaaggttgagatatt |
7105187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 42 - 147
Target Start/End: Complemental strand, 16651046 - 16650941
Alignment:
| Q |
42 |
ggtggtatgaagaagaaaagaaatcattatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaaggatgaattagtttt |
141 |
Q |
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||||| ||||||||||| |||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||||| ||| |
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| T |
16651046 |
ggtggcatgaagaagaagagaaatcactatgttgaaggtggtgatgctggtaacagggaggactacatcaatgaactcattagaaggatgaattaggttt |
16650947 |
T |
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| Q |
142 |
tggcat |
147 |
Q |
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| T |
16650946 |
tggcat |
16650941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 1426102 - 1426035
Alignment:
| Q |
69 |
tatgttgaaggtggtgatgctggaaacagggaagactacatcaacgaactcatcagaaggatgaatta |
136 |
Q |
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| T |
1426102 |
tatgttgaaggtggtgatgctggaaaccgtgaaaattacatcaatgagctcatcaaaagaatgaatta |
1426035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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