View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20838_high_2 (Length: 344)
Name: NF20838_high_2
Description: NF20838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20838_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 53 - 250
Target Start/End: Original strand, 45014413 - 45014604
Alignment:
| Q |
53 |
aaaaatcttactagcttgctgcatcaacctcaacctcttcacgaaaatagtaacttaaatagttaacgtagcgaacaaaatacagaaagccaaggaaaaa |
152 |
Q |
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| T |
45014413 |
aaaaatcttactagcttgctgcatcaa------cctcttcacgaaaatagtaacttaaatagttaacgtagcgaacaaaatacagaaagccaaggaaaaa |
45014506 |
T |
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| Q |
153 |
ttaactaaaaatccaaattttaattttttaatgaattggataattgtattgtatgattatcaaaataaggcacatagaccctcctttcacattcgaaa |
250 |
Q |
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| T |
45014507 |
ttaactaacaatccaaattttaattttttaatgaattggataattgtattgtatgattatcaaaataaggcacattgaccctcctttcacattcgaaa |
45014604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 270 - 316
Target Start/End: Original strand, 45014631 - 45014677
Alignment:
| Q |
270 |
taggaataacctcaaattaaaagcaacggaatcgtcggcaggtagct |
316 |
Q |
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| T |
45014631 |
taggaataacctcaaattaaaagcaacggaatcgtcggcaggtagct |
45014677 |
T |
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