View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20838_high_3 (Length: 342)

Name: NF20838_high_3
Description: NF20838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20838_high_3
NF20838_high_3
[»] chr5 (24 HSPs)
chr5 (72-330)||(9074616-9074874)
chr5 (72-330)||(8535453-8535714)
chr5 (72-330)||(8528898-8529156)
chr5 (72-330)||(1600193-1600434)
chr5 (72-291)||(8636819-8637041)
chr5 (72-291)||(8644164-8644386)
chr5 (72-173)||(8677757-8677858)
chr5 (31-84)||(9074891-9074944)
chr5 (216-289)||(2856824-2856897)
chr5 (216-289)||(2874434-2874507)
chr5 (221-310)||(8641475-8641564)
chr5 (218-280)||(2904941-2905003)
chr5 (221-291)||(8677918-8677988)
chr5 (216-289)||(2844997-2845070)
chr5 (31-83)||(8535383-8535435)
chr5 (31-74)||(8528828-8528871)
chr5 (31-74)||(1600461-1600504)
chr5 (205-330)||(8548002-8548121)
chr5 (125-171)||(8548146-8548192)
chr5 (31-72)||(8641256-8641297)
chr5 (31-72)||(9003352-9003393)
chr5 (97-173)||(8641343-8641418)
chr5 (31-73)||(8548273-8548315)
chr5 (72-173)||(9003422-9003523)
[»] chr7 (4 HSPs)
chr7 (72-330)||(48361745-48362003)
chr7 (72-330)||(35779789-35780041)
chr7 (40-74)||(48362030-48362064)
chr7 (31-72)||(35779719-35779760)
[»] chr4 (2 HSPs)
chr4 (72-330)||(9443059-9443317)
chr4 (31-74)||(9442989-9443032)
[»] chr1 (2 HSPs)
chr1 (203-298)||(26324195-26324290)
chr1 (72-178)||(5130758-5130865)
[»] chr6 (3 HSPs)
chr6 (218-289)||(16716447-16716518)
chr6 (31-76)||(16716229-16716274)
chr6 (125-166)||(16716364-16716405)
[»] scaffold0627 (2 HSPs)
scaffold0627 (206-330)||(4736-4860)
scaffold0627 (31-74)||(4542-4585)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 72 - 330
Target Start/End: Complemental strand, 9074874 - 9074616
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074874 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 9074775  T
Q  172 cataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattca 271  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074774 cataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattca 9074675  T
Q  272 taacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 330  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074674 taacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 9074616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 72 - 330
Target Start/End: Original strand, 8535453 - 8535714
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||    
T  8535453 aaaaacttcgaatccatatttctcaggttcatagtagataaaacaattgcaggaatgatataacaatatggcagcaccttcttcaaagtgttttattggc 8535552  T
Q  172 ca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcat 268  Q
    ||   ||||||  | | || || || | |||   ||||||||||||| |||||||||||||||||||  ||||||||||||||| |||| ||||||||||    
T  8535553 cagcttaaaccatatctccgtggaacacgactttccgaaggattgaatgaagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcat 8535652  T
Q  269 tcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 330  Q
    |||||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||    
T  8535653 tcataacccacattgaaacatcagataaaaaggtcgaatcacaaatgtaaagaaatcccttt 8535714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 72 - 330
Target Start/End: Original strand, 8528898 - 8529156
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  8528898 aaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattggaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggc 8528997  T
Q  172 ca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcat 268  Q
    ||   ||||||  |||||| || || | ||    || ||||||||||||||||||| ||||||||||  ||||||||||||||| |||| ||||||||||    
T  8528998 cagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcat 8529094  T
Q  269 tcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 330  Q
    |||||||||||| |||||||| ||||| ||| |||   ||||||||||| ||||||||||||    
T  8529095 tcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttt 8529156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 72 - 330
Target Start/End: Complemental strand, 1600434 - 1600193
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||| ||||| ||| ||||||| ||||||||||  |||| |||||||||||   || ||||||||||||||||||||||||||||||||||| |||||||    
T  1600434 aaaagctttgcatcgatatttcgcaggttcataatagattaaacaattgta---atcatataacaatatggcagcaccttcttcaaagtgttgtatcggc 1600338  T
Q  172 cataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattca 271  Q
    |||||||| |||| ||||| ||            |||||||||| ||||||||    |||||||| |||||||||||||||||||| |||||||| ||||    
T  1600337 cataaacccgaacaccatgaaa------------aaggattgaatgaagtatcgtacttgtaaaccttagtccatgattcttcaatgccatattccttca 1600250  T
Q  272 taacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 330  Q
    ||||||||| || ||||||||||||||| ||  ||||||||||||||||||||||||||    
T  1600249 taacccacattggaacatcagataaaaaggt--agtcacaaatgtaaagaaatcccttt 1600193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 8636819 - 8637041
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||||||||||| |||  |||||| ||||||||| |||||| ||||||| || |||||||||||||||||||||| || |||||||||||||||| ||||    
T  8636819 aaaaactttgaaaccaagtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagtgttttaccggc 8636918  T
Q  172 ---cataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcat 268  Q
       |||| |||  ||| |   | |  | | | |||| ||||| ||| | ||||||| ||||||||||| ||||||||||||||| |||| ||||||||||    
T  8636919 catcatataccataacgctgcgaatcaggtctgcccaaaggactgaccaaagtatcgatgttgtaaaccttagtccatgattctccaatgccatattcat 8637018  T
Q  269 tcataacccacactgaaacatca 291  Q
    |||||||||||| || |||||||    
T  8637019 tcataacccacattgcaacatca 8637041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 72 - 291
Target Start/End: Original strand, 8644164 - 8644386
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    ||||||||||||  ||| |||||  ||||||||| |||||| ||||||| || |||||||||||||||||||||| || |||||||||| ||||| ||||    
T  8644164 aaaaactttgaaagcatgtttcttgggttcatagtagataagacaattgcaggaatgatataacaatatggcagccccctcttcaaagttttttaccggc 8644263  T
Q  172 ca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcat 268  Q
    ||   ||||||  ||| |   | |  | | | |||| ||||| ||| | ||||||||||||||||||| ||||||||||||||| ||||  |||||||||    
T  8644264 caacataaaccataacgctgcgaatcaggtctgcccaaaggactgatcaaagtatcaatgttgtaaaccttagtccatgattctccaatgtcatattcat 8644363  T
Q  269 tcataacccacactgaaacatca 291  Q
    |||||||||||| || |||||||    
T  8644364 tcataacccacattgcaacatca 8644386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 8677757 - 8677858
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||||||||||| |||| |||||| ||||||||| |||||| ||||||| || ||||||||||||||||||||||||| |||||||||||||||| ||||    
T  8677757 aaaaactttgaaaccatgtttctcgggttcatagtagataagacaattgcaggaatgatataacaatatggcagcaccctcttcaaagtgttttaccggc 8677856  T
Q  172 ca 173  Q
    ||    
T  8677857 ca 8677858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 9074944 - 9074891
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaaaaactttgaat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9074944 ccttcaatgaaattagacttggaatatgtgggattacttcaaaaaactttgaat 9074891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 2856897 - 2856824
Alignment:
Q  216 cgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacat 289  Q
    |||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||||||||| || |||||    
T  2856897 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2856824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 2874507 - 2874434
Alignment:
Q  216 cgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacat 289  Q
    |||||||||||||||||||||  |||||||||||||| |||| |||||||||||||||||||||| || |||||    
T  2874507 cgaagtatcaatgttgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2874434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 221 - 310
Target Start/End: Original strand, 8641475 - 8641564
Alignment:
Q  221 tatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtccagtcac 310  Q
    |||||||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||  |||||| | ||||| ||| ||||||    
T  8641475 tatcaatgttgtaagccttagtccatgattctccaatgccatattcattcataacccacactgtgacatcaaagaaaaaggtcgagtcac 8641564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 2905003 - 2904941
Alignment:
Q  218 aagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccaca 280  Q
    ||||||||||||||||||  ||||||||||||||| |||| ||||||||||||||||||||||    
T  2905003 aagtatcaatgttgtaaatcttagtccatgattctccaatgccatattcattcataacccaca 2904941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 221 - 291
Target Start/End: Original strand, 8677918 - 8677988
Alignment:
Q  221 tatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatca 291  Q
    |||||||||||||||| ||||||||||||||| |||| ||||||||||||||| |||||| || |||||||    
T  8677918 tatcaatgttgtaaaccttagtccatgattctccaatgccatattcattcatatcccacattgcaacatca 8677988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 216 - 289
Target Start/End: Complemental strand, 2845070 - 2844997
Alignment:
Q  216 cgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacat 289  Q
    ||||||||||||| |||||||  |||||||||||||| |||| |||||||||||||||||||||| || |||||    
T  2845070 cgaagtatcaatgctgtaaacaatagtccatgattctccaatgccatattcattcataacccacattgtaacat 2844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 83
Target Start/End: Original strand, 8535383 - 8535435
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaaaaactttgaa 83  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  8535383 ccttcaatgaaattagacttggaatgtgtgggattacttcaaaaaaatttgaa 8535435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 8528828 - 8528871
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaaa 74  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  8528828 ccttcaatgaaattagacttggaatgtgtgggattacttcaaaa 8528871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Complemental strand, 1600504 - 1600461
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaaa 74  Q
    |||||||||||||||||||||||||||| ||||||| |||||||    
T  1600504 ccttcaatgaaattagacttggaatatgcgggattatttcaaaa 1600461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 8548121 - 8548002
Alignment:
Q  205 gaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtcc 304  Q
    |||||||||  | |||||||||||| |||||  ||||||||||| |||      |||||||| ||||||||||||| || ||||| ||| | | |  |||    
T  8548121 gaaggattggtcaaagtatcaatgtggtaaatcttagtccatgactct------ccatattcgttcataacccacattgtaacataagagagatagttcc 8548028  T
Q  305 agtcacaaatgtaaagaaatcccttt 330  Q
    ||||||||||||||||| ||||||||    
T  8548027 agtcacaaatgtaaagacatcccttt 8548002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 171
Target Start/End: Complemental strand, 8548192 - 8548146
Alignment:
Q  125 aatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    ||||||||||||||| ||||||||| |||||||||||||||| ||||    
T  8548192 aatgatataacaatacggcagcaccctcttcaaagtgttttaccggc 8548146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 8641256 - 8641297
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaa 72  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  8641256 ccttcaatgagattagacttggaatatgtggaattacttcaa 8641297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 9003352 - 9003393
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaa 72  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  9003352 ccttcaatgagattagacttggaatatgtggaattacttcaa 9003393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 173
Target Start/End: Original strand, 8641343 - 8641418
Alignment:
Q  97 ggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggcca 173  Q
    ||||||||| ||||||| |||||| || ||||||||||| |||  |||||||| |||||||||||| ||| ||||||    
T  8641343 ggttcatagtagataaa-caattgcaggaatgatataaccataacgcagcaccatcttcaaagtgtattaccggcca 8641418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 73
Target Start/End: Complemental strand, 8548315 - 8548273
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaa 73  Q
    |||||||||| |||||||||||||||||| | |||||||||||    
T  8548315 ccttcaatgagattagacttggaatatgttgaattacttcaaa 8548273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 173
Target Start/End: Original strand, 9003422 - 9003523
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    ||||||| ||||||||| |||||| ||||||||| |||  |||||||||||  | | ||| |||||||||  |||||  ||||||||  |||||| ||||    
T  9003422 aaaaactctgaatccatgtttctcgggttcatagtagactaaacaattgtacgattcataaaacaatatgcaagcactctcttcaaacagttttaccggc 9003521  T
Q  172 ca 173  Q
    ||    
T  9003522 ca 9003523  T

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Target: chr7 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 72 - 330
Target Start/End: Complemental strand, 48362003 - 48361745
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||| ||||| ||| ||||||||||||||||||  |||| ||||  | |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  48362003 aaaagctttgcatctatatttctcaggttcataatagattaaacggtcgtaggaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 48361904  T
Q  172 cataaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattca 271  Q
    |||||| |||||  ||| | |  || || || |||||||||||||| |||||  ||||||||||| |||||| |||||||||||||||||||||||||||    
T  48361903 cataaagctgaatgccaagaagcaaaactgctcgaaggattgaacgcagtattgatgttgtaaaccttagtctatgattcttcaataccatattcattca 48361804  T
Q  272 taacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 330  Q
    ||||||||| |||||||||||||  ||| ||| ||||||||||||||||||||||||||    
T  48361803 taacccacattgaaacatcagatgcaaaggtcgagtcacaaatgtaaagaaatcccttt 48361745  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 72 - 330
Target Start/End: Original strand, 35779789 - 35780041
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||||||||| |||||||||||||||||||| || |||||||||||||| |  ||||||||||||||||||||         |||||| |||||| ||||    
T  35779789 aaaaactttgtatccatatttctcaggttcaaagtagataaaacaattgcatgaatgatataacaatatggca---------tcaaagggttttaccggc 35779879  T
Q  172 ca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcat 268  Q
    ||   ||||||  ||| |  || |||| || ||||   || ||||| |||||| |||||||||||||| |||||||| ||||||||||| ||||  ||||    
T  35779880 caacataaaccataacgcggtgaaataggatagcctagagaattgaccgaagtctcaatgttgtaaaccttagtccacgattcttcaatgccatgctcat 35779979  T
Q  269 tcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 330  Q
    |||||||||||| || |||||||   |||||  || ||||||||||||||||||||||||||    
T  35779980 tcataacccacattgtaacatcaacaaaaaaattcaagtcacaaatgtaaagaaatcccttt 35780041  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 40 - 74
Target Start/End: Complemental strand, 48362064 - 48362030
Alignment:
Q  40 aaattagacttggaatatgtgggattacttcaaaa 74  Q
    |||||||||||||||||||||||||||||||||||    
T  48362064 aaattagacttggaatatgtgggattacttcaaaa 48362030  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 35779719 - 35779760
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaa 72  Q
    |||||||||| |||||||||||||||||||| ||||||||||    
T  35779719 ccttcaatgatattagacttggaatatgtggaattacttcaa 35779760  T

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Target: chr4 (Bit Score: 118; Significance: 4e-60; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 72 - 330
Target Start/End: Original strand, 9443059 - 9443317
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatagaagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcggc 171  Q
    |||||||||||| |||||||| |||||||| ||| || ||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||    
T  9443059 aaaaactttgaacccatatttttcaggttcgtagtaggtaaaacaattgaaggaatgatatgacaatatggcagcaccttcttcaaagtgttttatcggc 9443158  T
Q  172 ca---taaacctgaaccccatgtaataagacagcccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcat 268  Q
    ||   ||||||  |||||| || || | ||    || ||||||||||||||||||| ||||||||||  ||||||||||||||| |||| ||||||||||    
T  9443159 cagcttaaaccataaccccgtggaacacgat---ccaaaggattgaacgaagtatcgatgttgtaaatcttagtccatgattctccaatgccatattcat 9443255  T
Q  269 tcataacccacactgaaacatcagataaaaatgtccagtcacaaatgtaaagaaatcccttt 330  Q
    |||||||||||| |||||||| ||||| ||| |||   ||||||||||| ||||||||||||    
T  9443256 tcataacccacattgaaacattagatataaaggtcggatcacaaatgtatagaaatcccttt 9443317  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 9442989 - 9443032
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaaa 74  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  9442989 ccttcaatgaaattagacttggaatgtgttggattacttcaaaa 9443032  T

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Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 203 - 298
Target Start/End: Complemental strand, 26324290 - 26324195
Alignment:
Q  203 ccgaaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaa 298  Q
    |||||||||||||||||| ||| ||||||||||  ||||||||||||||| || | |||||||||||||||||||||| |||||||||||||||||    
T  26324290 ccgaaggattgaacgaagcatcgatgttgtaaatcttagtccatgattctccagtgccatattcattcataacccacattgaaacatcagataaaa 26324195  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 72 - 178
Target Start/End: Original strand, 5130758 - 5130865
Alignment:
Q  72 aaaaactttgaatccatatttctcaggttcatag-aagataaaacaattgtagcaatgatataacaatatggcagcaccttcttcaaagtgttttatcgg 170  Q
    |||||||||| ||| ||||||||| ||||||| | |||| |||||| ||| || ||||||||| ||||||||||||||| |||||||||||||||| |||    
T  5130758 aaaaactttgtatctatatttctccggttcatggtaagacaaaacagttgcaggaatgatatagcaatatggcagcaccctcttcaaagtgttttaccgg 5130857  T
Q  171 ccataaac 178  Q
    ||| ||||    
T  5130858 ccaaaaac 5130865  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 218 - 289
Target Start/End: Original strand, 16716447 - 16716518
Alignment:
Q  218 aagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacat 289  Q
    |||||||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||||| || |||||    
T  16716447 aagtatcaatgtggtaaaccttagtccatgattctccaatgccatattcattcataacccacattgtaacat 16716518  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 31 - 76
Target Start/End: Original strand, 16716229 - 16716274
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaaaaa 76  Q
    |||||||||| |||||||||||||||||||| ||||||| ||||||    
T  16716229 ccttcaatgagattagacttggaatatgtggaattactttaaaaaa 16716274  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 16716364 - 16716405
Alignment:
Q  125 aatgatataacaatatggcagcaccttcttcaaagtgtttta 166  Q
    ||||||||||||||| | ||||||| ||||||||||||||||    
T  16716364 aatgatataacaatacgccagcaccctcttcaaagtgtttta 16716405  T

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Target: scaffold0627 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 206 - 330
Target Start/End: Original strand, 4736 - 4860
Alignment:
Q  206 aaggattgaacgaagtatcaatgttgtaaactttagtccatgattcttcaataccatattcattcataacccacactgaaacatcagataaaaatgtcca 305  Q
    |||||||| || |||||| ||||| |||||| ||||||||||||||  |||| |||||||||||||||||||||| || |||||    |||  |  |  |    
T  4736 aaggattgtacaaagtattaatgtggtaaaccttagtccatgattcaccaatgccatattcattcataacccacattgtaacatattttaaggagtttga 4835  T
Q  306 gtcacaaatgtaaagaaatcccttt 330  Q
    |||||||||||||||||||||||||    
T  4836 gtcacaaatgtaaagaaatcccttt 4860  T

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Target: scaffold0627; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 4542 - 4585
Alignment:
Q  31 ccttcaatgaaattagacttggaatatgtgggattacttcaaaa 74  Q
    |||||||||| |||||||||||||||||||| ||||||||||||    
T  4542 ccttcaatgagattagacttggaatatgtggaattacttcaaaa 4585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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