View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20838_high_4 (Length: 336)
Name: NF20838_high_4
Description: NF20838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20838_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 30 - 205
Target Start/End: Original strand, 34216114 - 34216289
Alignment:
| Q |
30 |
agtatgacagtttcttttgagtttatcgggttcaataatcaactttaaaatcatatcacatatatcccttctagtaaacaattttctagtgaagaaaaaa |
129 |
Q |
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| T |
34216114 |
agtatgatagtttcttttgagtttatcgggttcaataatcaactttaaaatcatatcacatatatcccttctagtaaacaattttctagcgaagataaaa |
34216213 |
T |
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| Q |
130 |
ttaattagtgatcttttaaaaatgttggtgaaaattagaaagtatattgtttagcttatgatgctaagcgatcttc |
205 |
Q |
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| T |
34216214 |
ttaattagtgatcttttaaaaatgttggtgaaaattagaaagtatattgtttagcttatgatgttaagcgatcttc |
34216289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 272 - 322
Target Start/End: Original strand, 34216355 - 34216405
Alignment:
| Q |
272 |
gaaatatgtatatgatttggctcctgcaagtcaaattttttggatccgtct |
322 |
Q |
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| T |
34216355 |
gaaatatgtatatgatttggctcctgcaagtcaaattttttggatccgtct |
34216405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 192
Target Start/End: Complemental strand, 6458492 - 6458346
Alignment:
| Q |
46 |
ttgagtttatcgggttcaataatcaactttaaaatcatatcacatatatcccttctagtaaacaattttctagtgaagaaaaaattaattagtgatcttt |
145 |
Q |
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| T |
6458492 |
ttgagtttatgtggttcaataatcaaatttagaattacatcatagatatcctttcaaatgaacaattttttagttaagataaattgaattagtgatcttt |
6458393 |
T |
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| Q |
146 |
taaaaatgttggtgaaaattagaaagtatattgtttagcttatgatg |
192 |
Q |
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| T |
6458392 |
tgaaaatgttggtggaaattagaaagtatattgtttatcctatgatg |
6458346 |
T |
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