View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20839_high_1 (Length: 338)
Name: NF20839_high_1
Description: NF20839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20839_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 37058752 - 37058453
Alignment:
| Q |
30 |
atttagaactctcaaattatatagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgtta |
129 |
Q |
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| T |
37058752 |
atttagaactctcaaattatagagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgtta |
37058653 |
T |
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| Q |
130 |
cctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgc |
229 |
Q |
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| T |
37058652 |
cctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgc |
37058553 |
T |
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| Q |
230 |
aaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaatgagattaaggcttctttgtctgtggt |
329 |
Q |
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| T |
37058552 |
aaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaataagattaaggcttctttgtctgtggt |
37058453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 30 - 329
Target Start/End: Complemental strand, 37066230 - 37065931
Alignment:
| Q |
30 |
atttagaactctcaaattatatagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgtta |
129 |
Q |
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| T |
37066230 |
atttagaactctcaaattatagagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgcaattgaagggactgaagagaggacatgtta |
37066131 |
T |
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| Q |
130 |
cctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgc |
229 |
Q |
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| T |
37066130 |
cctatataagggcttaagttacctgagagtccgaagcctgaaaggtccaagctagtcactctttggttatgcttgtcacataggacaccagtccaattgc |
37066031 |
T |
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| Q |
230 |
aaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaatgagattaaggcttctttgtctgtggt |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
37066030 |
aaggagatgaattatggatccaagaggataatgggggaggagaagtgttattattgcttaactgagattttaataagattaaggcttctttgtctgtggt |
37065931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Complemental strand, 41908628 - 41908570
Alignment:
| Q |
42 |
caaattatatagattggtaatttgctcaggaatgaatcctgtgaactggttatcctgca |
100 |
Q |
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| T |
41908628 |
caaattatataaattggtaatttggttaggaatgaatcctgtgagtttgttatcctgca |
41908570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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