View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20839_high_8 (Length: 301)
Name: NF20839_high_8
Description: NF20839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20839_high_8 |
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| [»] scaffold0115 (1 HSPs) |
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Alignment Details
Target: scaffold0115 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: scaffold0115
Description:
Target: scaffold0115; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 280
Target Start/End: Original strand, 45581 - 45848
Alignment:
| Q |
13 |
cacagatgacccaaaggaacttggtaagtgcgttataaaatccatagatagatctatccacacttgttgagggattggtaatggtttgagtaacccctgt |
112 |
Q |
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| T |
45581 |
cacagatgacccaaaggaacttggtaagtgcgttataaaatccatagatagatctatccacacttgttgagggattggtaatggtttgagtaacccctgt |
45680 |
T |
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| Q |
113 |
tttttggttggcatgtacttactcttatggaaaatttcgcacctaaggacccagtgtttgatatctttataggcatatggttaaagaaacgatgcggcca |
212 |
Q |
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| T |
45681 |
ttcttggttggcatttacttactcttctgaaaaatttcgcacctgaggacccaatgtttcacatctttataggcatctggtcaaagaaacgatgcggcca |
45780 |
T |
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| Q |
213 |
ttctggatagagttggctggagactggagtgtcctgaaagaggtgtgtcatgaaactctttgatgatg |
280 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45781 |
ttctggctagagttggctggagactggagtgtcctgaaagaggtgtgtcatgaaactctttgatgatg |
45848 |
T |
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