View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2083_high_2 (Length: 346)
Name: NF2083_high_2
Description: NF2083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2083_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 6 - 331
Target Start/End: Complemental strand, 28927876 - 28927551
Alignment:
| Q |
6 |
agaaccaaagcacttgccgaccaaagcattgctatgttgtcgctagagtattgtactaccgggaaactcttttctcaaccatagacagatatgacttcaa |
105 |
Q |
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| T |
28927876 |
agaacaaaagcacttgccgaccaaagcattgctatgttgttgctggagtattgtactaccaggaaactcttctctcaaccatagaaagatatgacttcaa |
28927777 |
T |
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| Q |
106 |
tctcaataaatctcagaaaaacttgtagatgctccagtcttttttgttgctgataaatctgcaattactgatagagactgattgtatggaagaaagagtt |
205 |
Q |
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| T |
28927776 |
tctcaataaatctcaaacaaacttgtagatgctccagtcttttttgttgatgataaatctgcaattactgatagagactgattgcagggaagaaagagtt |
28927677 |
T |
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| Q |
206 |
ttccataatatagcatgatgattgatgaagttgtagggcagtaagatcagtttcttttaaggcataaatggagcaagaaaattgtacatgatagaaaaac |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28927676 |
ttccataatatagcatgatgattgatgaagttgtagggtagtaagatcagtttcttttaaggcataaatggagcaagaaaattgtacatgatagaaaaac |
28927577 |
T |
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| Q |
306 |
acattgaaatgattgaaagcaaaaca |
331 |
Q |
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| T |
28927576 |
acattgaaatgattgaaagcaaaaca |
28927551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 135 - 331
Target Start/End: Original strand, 30112546 - 30112735
Alignment:
| Q |
135 |
tgctccagtcttttttgttgctgataaatctgcaattactgatagagactgattgtatggaagaaagagttttccataatatagcatgatgattgatgaa |
234 |
Q |
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| T |
30112546 |
tgctccagtcatttttgttgctgatacatctgcaattactgatagagtttgattgtaggggagaatgagttttccataatataacatgat-------gaa |
30112638 |
T |
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| Q |
235 |
gttgtagggcagtaagatcagtttcttttaaggcataaatggagcaagaaaattgtacatgatagaaaaacacattgaaatgattgaaagcaaaaca |
331 |
Q |
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| T |
30112639 |
gttgtaagggaggaagatcaatttcttttaaggcataaatagtgcaagaaaattgtaaatgatagaaaaacaaattaaaatgattgaaagcaaaaca |
30112735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 43604906 - 43604983
Alignment:
| Q |
227 |
ttgatgaagttgtagggcagtaagatcagtttcttttaaggcataaatggagcaagaaaattgtacatgatagaaaaa |
304 |
Q |
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||||||||| ||||| ||||| |||| |||||| || |||||||||||| ||||||||||||| |||||||||||| |
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| T |
43604906 |
ttgatgaagatgtagaagagtaaaatcaatttcttatatggcataaatggatcaagaaaattgtaaatgatagaaaaa |
43604983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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