View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2083_low_6 (Length: 222)
Name: NF2083_low_6
Description: NF2083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2083_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 17 - 205
Target Start/End: Complemental strand, 44847034 - 44846847
Alignment:
| Q |
17 |
aggaactgttacgccaaaaatttataacttgaccacatctgacttctacttctagtggaaacaaattcaaccataaacaattagaaactccaaattttat |
116 |
Q |
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| T |
44847034 |
aggaactgttacgccaaaaatttataacttgaccacatctgacttctacttctagtggaaacaaattcaaccataaacaattagaaactccaaattttat |
44846935 |
T |
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| Q |
117 |
gttaacattttactccatgtcatttataaatgttttgaaacaatctattacagtgtgagccattatcggccgcaaattccgtaagattg |
205 |
Q |
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| T |
44846934 |
g-taacattttactccctgtcatttataaatgttttgaaacaatctattacagtgtgagccattattggccgcaaattccgtaagattg |
44846847 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 19 - 116
Target Start/End: Complemental strand, 44859917 - 44859819
Alignment:
| Q |
19 |
gaactgttacgccaaaaatttataacttgaccacatctgacttctacttctagtggaaacaaattcaaccataaacaatta-gaaactccaaattttat |
116 |
Q |
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| T |
44859917 |
gaactgttacgccaaagatttataccttgaccacatctgatttctacatcaaatggaattaaattcaatcatcaacaattacaaaactccaaattttat |
44859819 |
T |
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