View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20840_high_1 (Length: 729)
Name: NF20840_high_1
Description: NF20840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20840_high_1 |
 | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 640; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 640; E-Value: 0
Query Start/End: Original strand, 30 - 700
Target Start/End: Complemental strand, 51457687 - 51457012
Alignment:
| Q |
30 |
tcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457687 |
tcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaa |
51457588 |
T |
|
| Q |
130 |
taaatcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatcgctgcgaccatttgtgtacccagtgaagaattggtggatatta |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457587 |
taaatcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatcgctgcgaccatttgtgtacccagtgaagaattggtggatatta |
51457488 |
T |
|
| Q |
230 |
atatctccctgcattcaatgaacaactcaaataaaaatgcagaaattaccagcaacagaatatcaagtaaaggcagtaacataaagcagttacaattcac |
329 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
51457487 |
atatctccctgcattcaatgaacaactcaaataaaaatgcagaaattaccagcaacagaatatcaagtaaaggcagtcacataaagcagttacaattcac |
51457388 |
T |
|
| Q |
330 |
ccgagactgttaggcagtacaactggacaaagaaaattcaacaagaaaacataaaaaacaataagtccaacttgacatcaacatgcagtgagtatacgta |
429 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457387 |
ccgagactgttaggcagtacaactggacaaagaaaattcaacaagaaaacataaaaaacaatgagtccaacttgacatcaacatgcagtgagtatacgta |
51457288 |
T |
|
| Q |
430 |
ataacaggcaaaaataccaatagataaattgaatgaagaggatgcaatgacaacaataaataatctggat-----atgcaaaaacaaatggggacaccag |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
51457287 |
ataacaggcaaaaataccaatagataaattgaatgaagaggatgcaatgacaacaataaataatctggatatgtgatgcaaaaacaaatggggacaccag |
51457188 |
T |
|
| Q |
525 |
acagcaagaaatttagataaatttaaaaggataagattacaagatattgaatgagaagtaggaagcagcatttgttgaaaatgttgggagaaacaacata |
624 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457187 |
acagcaagaaatttagataaatttaaaaggataagattacaagatattgaatgagaagtaggaagcagcatttgttgaaaatgttgggagaaacaacata |
51457088 |
T |
|
| Q |
625 |
ggacaagcatgaacgactgcaactttatgactaacacatgccaattacactcaaaaaattggcttgaggctcacaa |
700 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457087 |
tgacaagcatgaacgactgcgactttatgactaacacatgccaattacactcaaaaaattggcttgaggctcacaa |
51457012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 56 - 278
Target Start/End: Complemental strand, 51482305 - 51482082
Alignment:
| Q |
56 |
aaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaataaatcagaaggaggccaatctttca |
155 |
Q |
| |
|
||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||| |||| |||||||| |||||||||||||||||||| |
|
|
| T |
51482305 |
aaaggatctgtatattctttatacggcaaggaagatatgaactcagcacaatgacgaggcaaactttccctaaataaattagaaggaggccaatctttca |
51482206 |
T |
|
| Q |
156 |
atttcaacacctcaggccatttaagccaatcgctgcgaccatttgtgtacccagtgaagaattggtggatattaatatctccctgcattcaatgaacaac |
255 |
Q |
| |
|
||||||| |||| |||||| ||||||||||| ||||||||||||||||||||| ||||||||||| | |||||||| |||||||||||| | |||||| |
|
|
| T |
51482205 |
atttcaaaacctgaggccaattaagccaatctgggcgaccatttgtgtacccagtaaagaattggtgcacattaatatttccctgcattcattcaacaac |
51482106 |
T |
|
| Q |
256 |
tcaaataaaaa-tgcagaaattac |
278 |
Q |
| |
|
||||||||||| |||||||||||| |
|
|
| T |
51482105 |
tcaaataaaaattgcagaaattac |
51482082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 32 - 288
Target Start/End: Complemental strand, 51499030 - 51498773
Alignment:
| Q |
32 |
acagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaata |
131 |
Q |
| |
|
||||||||||| ||| ||| | ||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||| | ||||| |
|
|
| T |
51499030 |
acagcaaggttaagaacacctttgaaaggatctgtatattctttatacggcaaggaagatatgaactcagcacaatgacgaggcaaactttcttcaaata |
51498931 |
T |
|
| Q |
132 |
aatcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatcgctgcgaccatttgtgtacccagtgaagaattggtggatattaat |
231 |
Q |
| |
|
| | ||||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||| |||||||||||||| ||||||||||| | |||||| |
|
|
| T |
51498930 |
agttagaaggaggccaatctttcaatttcaaaacctgaggccaattaagccaatcagggcgaccttttgtgtacccagtaaagaattggtgcacattaat |
51498831 |
T |
|
| Q |
232 |
atctccctgcattcaatgaacaactcaaataaaaa-tgcagaaattaccagcaacaga |
288 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||| |||||||||||| |||||||| |
|
|
| T |
51498830 |
atctccctgcattcaatcaacaactcagataaaaattgcagaaattacaggcaacaga |
51498773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 33 - 288
Target Start/End: Original strand, 30205139 - 30205395
Alignment:
| Q |
33 |
cagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaataa |
132 |
Q |
| |
|
|||||||||| ||| |||| | ||||||| ||| |||||||| | |||||||||||||||||||||||| |||||| || ||| ||||| |||||| |
|
|
| T |
30205139 |
cagcaaggtttagaacaccattgaaaggatctgtatattctttgaacggcaaggaagatatgaactcagcacaatgacggggcaaactttcctcaaataa |
30205238 |
T |
|
| Q |
133 |
atcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatcgctgcgaccatttgtgtacccagtgaagaattggtggatattaata |
232 |
Q |
| |
|
|| |||||||||||||||||||| |||||| |||| |||||| |||||||| || | |||| |||||||||||||| ||||||| ||| | ||||||| |
|
|
| T |
30205239 |
attagaaggaggccaatctttcagtttcaaaaccttaggccaattaagccagtccaggagaccctttgtgtacccagtaaagaatttgtgcaaattaata |
30205338 |
T |
|
| Q |
233 |
tctccctgcattcaatgaacaactcaaataaaaa-tgcagaaattaccagcaacaga |
288 |
Q |
| |
|
|||||||||||||||| |||| |||| ||||||| |||||||||||| |||||||| |
|
|
| T |
30205339 |
tctccctgcattcaatcaacacctcagataaaaattgcagaaattactggcaacaga |
30205395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 505 - 682
Target Start/End: Complemental strand, 51439787 - 51439607
Alignment:
| Q |
505 |
aaaacaaatggggacaccagacagcaagaaattt----agataaatttaaaaggataagattacaagatattgaatgagaagtaggaagcagcatttgtt |
600 |
Q |
| |
|
||||||| | ||||||||| ||||||| ||||| ||||||||||||||| ||||||| ||| ||||||||||||||||| | || ||||||| || |
|
|
| T |
51439787 |
aaaacaagtagggacaccatacagcaataaattgtgcgagataaatttaaaag-ataagatgacaggatattgaatgagaagtgaggagtagcatttctt |
51439689 |
T |
|
| Q |
601 |
gaaaatgttgggagaaacaacataggacaagcatgaacgactgcaactttatgactaacacatgccaattacactcaaaaaa |
682 |
Q |
| |
|
||||| ||||||||||||| | || |||||||| || ||| | || ||||||||| |||||||||||||||||||||||| |
|
|
| T |
51439688 |
gaaaaggttgggagaaacagcgtatgacaagcaccaaggacagagacattatgactaccacatgccaattacactcaaaaaa |
51439607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 203 - 289
Target Start/End: Complemental strand, 51440068 - 51439980
Alignment:
| Q |
203 |
tacccagtgaagaattggtggatatt--aatatctccctgcattcaatgaacaactcaaataaaaatgcagaaattaccagcaacagaa |
289 |
Q |
| |
|
|||||||| || |||||||||||||| |||| ||||||| |||||| |||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51440068 |
tacccagtaaataattggtggatattttaataattccctgcgttcaatcaacaactccaataaaaatgcagaaattaccagcaacagaa |
51439980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 186
Target Start/End: Complemental strand, 51440140 - 51440071
Alignment:
| Q |
117 |
aaagttcctgaaataaatcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatc |
186 |
Q |
| |
|
||||||||||| |||||||| ||| ||||||||||||||| |||||||| |||||| ||||||| ||| |
|
|
| T |
51440140 |
aaagttcctgacataaatcaaaagaaggccaatctttcaaattcaacacgcaaggccaattaagccgatc |
51440071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 2e-91; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 30 - 291
Target Start/End: Complemental strand, 43162011 - 43161743
Alignment:
| Q |
30 |
tcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaa |
129 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43162011 |
tcacagcaaggttgagagaaccactaaatggatttgtatattctttataaggcaaggaagttatgaactcagcatgatgacgaggtaaacgttcctgaaa |
43161912 |
T |
|
| Q |
130 |
taaatcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatc-------gctgcgaccatttgtgtacccagtgaagaattggtg |
222 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| || | ||||||| ||||||| |||||||||||| |||| |
|
|
| T |
43161911 |
taaatcagaaggaggccaatctttcaatttcaacacctcaggccaattaagccagtccttgcgagttgcgaccccttgtgtaaccagtgaagaatcggtg |
43161812 |
T |
|
| Q |
223 |
gatattaatatctccctgcattcaatgaacaactcaaataaaaatgcagaaattaccagcaacagaata |
291 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||| |||||||||| ||||||||| ||| |||||||| |
|
|
| T |
43161811 |
gatattaatgtctctctgcattcaatgaacaactaaaataaaaataaagaaattactagccacagaata |
43161743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 9e-32
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 27397675 - 27397441
Alignment:
| Q |
30 |
tcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaa |
129 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||||||| ||||||||| | |||||||||||||||||||| ||| |||||| |||||| ||| | ||| |
|
|
| T |
27397675 |
tcacagcaaggttgagagcacctttgaaaggatttgtatattctttaaatggcaaggaagatatgaactccgcacaatgacgcggtaaactttcttcaaa |
27397576 |
T |
|
| Q |
130 |
taaatcagaaggaggccaatctttcaatttcaacacctcaggccatttaagccaatcgctgcgaccatttgtgtacccagtgaagaattggtggatatta |
229 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| || | |||||| | | | ||| || ||| ||||||||||||||| ||||||||||| | |||| |
|
|
| T |
27397575 |
tagtttagaaggaggccaatctttcaatttcaatacttgaggccaatcatgtttatccttgggacaatttgtgtacccagtaaagaattggtgcacatta |
27397476 |
T |
|
| Q |
230 |
atatctccctgcattcaatgaacaactcaaataaa |
264 |
Q |
| |
|
|||||| |||||| || || |||||||||||| |
|
|
| T |
27397475 |
atatctatctgcatcggatcaaaaactcaaataaa |
27397441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 485 - 608
Target Start/End: Complemental strand, 43161689 - 43161562
Alignment:
| Q |
485 |
ataaataatctggatatg-----caaaaacaaatggggacaccagacagcaagaaatttagataaatttaaaaggataagattacaagatattgaatgag |
579 |
Q |
| |
|
|||||||||||||||||| ||||||||||| |||||||| ||| ||| ||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43161689 |
ataaataatctggatatgtaatccaaaaacaaattgggacacccaacatcaaaaaatttagaccaatttaaaag-ataagattacaagatattgaatgag |
43161591 |
T |
|
| Q |
580 |
aagtaggaagcagcatttgttgaaaatgt |
608 |
Q |
| |
|
|||| |||| ||||||||||||||||| |
|
|
| T |
43161590 |
aagtgtgaagtcgcatttgttgaaaatgt |
43161562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 138 - 286
Target Start/End: Original strand, 20867770 - 20867918
Alignment:
| Q |
138 |
aaggaggccaatctttcaatttcaacacctcaggccatttaagccaatcgctgcgaccatttgtgtacccagtgaagaattggtggatattaatatctcc |
237 |
Q |
| |
|
||||||||| ||| ||||||||||| | || |||||| | |||| ||| ||||||||||||| |||||||| ||||| | | | ||||||||||| |
|
|
| T |
20867770 |
aaggaggccgatcattcaatttcaatagctgaggccaatcaagcttatccttgcgaccatttgtatacccagtaaagaaatcatccactttaatatctcc |
20867869 |
T |
|
| Q |
238 |
ctgcattcaatgaacaactcaaataaaaatgcagaaattaccagcaaca |
286 |
Q |
| |
|
||||||| ||| ||||| |||||||||||| |||||||| |||||||| |
|
|
| T |
20867870 |
ctgcattgaatcaacaagtcaaataaaaatttagaaattatcagcaaca |
20867918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 30 - 164
Target Start/End: Original strand, 6924 - 7058
Alignment:
| Q |
30 |
tcacagcaaggttgagagaaccactaaaaggatttgtgtattctttataaggcaaggaagatatgaactcagcatgatgacgaggtaaaagttcctgaaa |
129 |
Q |
| |
|
|||| |||||||| | ||||||||| | ||||| ||||||||||||||| |||||| |||||| |||||| || |||| ||||||| ||||| ||| |
|
|
| T |
6924 |
tcacggcaaggttaatagaaccacttacaggatgtgtgtattctttatacggcaagtaagatacgaactcctcaaaatgattaggtaaacattccttaaa |
7023 |
T |
|
| Q |
130 |
taaatcagaaggaggccaatctttcaatttcaaca |
164 |
Q |
| |
|
| | ||||||||||||||||||||||| ||||||| |
|
|
| T |
7024 |
tgattcagaaggaggccaatctttcaacttcaaca |
7058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 189 - 282
Target Start/End: Original strand, 136481 - 136574
Alignment:
| Q |
189 |
tgcgaccatttgtgtacccagtgaagaattggtggatattaatatctccctgcattcaatgaacaactcaaataaaaatgcagaaattaccagc |
282 |
Q |
| |
|
||||||||||||||||||| | ||||| | || | |||||||| |||||||||| ||| |||||||| ||||||||| ||||||||| |||| |
|
|
| T |
136481 |
tgcgaccatttgtgtacccgctaaagaaatcgttcacattaatatttccctgcatttaatcaacaactcgaataaaaattcagaaattatcagc |
136574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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