View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20841_high_3 (Length: 343)

Name: NF20841_high_3
Description: NF20841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20841_high_3
NF20841_high_3
[»] chr3 (5 HSPs)
chr3 (30-332)||(7419411-7419718)
chr3 (30-190)||(32240559-32240720)
chr3 (99-184)||(32223351-32223439)
chr3 (278-319)||(6777142-6777183)
chr3 (232-273)||(32240728-32240769)
[»] scaffold0251 (1 HSPs)
scaffold0251 (278-327)||(17816-17865)
[»] chr2 (2 HSPs)
chr2 (30-131)||(40879070-40879171)
chr2 (278-332)||(31117736-31117790)
[»] chr4 (2 HSPs)
chr4 (278-327)||(42705987-42706036)
chr4 (278-326)||(32308618-32308666)
[»] chr6 (1 HSPs)
chr6 (278-326)||(35013692-35013740)
[»] chr5 (2 HSPs)
chr5 (30-131)||(9624450-9624553)
chr5 (278-327)||(2742317-2742366)


Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 7419411 - 7419718
Alignment:
Q  30 atcaagagccaagttaaactaagatgcaagcaatttcaagcacatgtgtaacctaacttcagtaagtcgaatcaacaatttataagtttaacggaactat 129  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  7419411 atcaagagccaagttaaactaagatgctagcaatttcaagcacatgtgtaacctaacttcagtaagtctaatcaacaatttataagtttaacggaactat 7419510  T
Q  130 gtgaatcaacataagaagaaaaatcaaaggtgatcaataaaaacaggtagaaaaaagatatatata--tttcttttggtaca---agtagaaaaatatat 224  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  ||| ||||||||||   |||| ||||| ||||    
T  7419511 gtgaatcaacataagaagaaaaatcaaagaaaatcaataaaaacaggtagaaaaaagatatatatattttttttttggtacaagcagtaaaaaaagatat 7419610  T
Q  225 tctactaaattaaaaactttccttttaatatgtcagcatatgaggagcttccaactttttacagcggaagctgccgctaaggaggtgacaagacatggtg 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||    
T  7419611 tctactaaattaaaaactttccttttaatatgtcagcatatgaggagcttccaactttttacagcggatgctgccgctaaggaggtggcaagacatggtg 7419710  T
Q  325 ctgttcat 332  Q
    ||| ||||    
T  7419711 ctgctcat 7419718  T

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Target: chr3; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 30 - 190
Target Start/End: Original strand, 32240559 - 32240720
Alignment:
Q  30 atcaagagccaagttaaactaagatgcaagcaatttcaagcacatgtgtaacctaacttcagtaagtcgaatcaacaatttataagtttaacggaactat 129  Q
    |||||||||| |||| ||||||||||| |||||||||||||||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  32240559 atcaagagcctagttgaactaagatgccagcaatttcaagcacatgagtaacctaacttgagtaagtctaatcaacaatttataagtttaacggaactat 32240658  T
Q  130 gtgaatcaacataagaagaaaaatcaaagg-tgatcaataaaaacaggtagaaaaaagatat 190  Q
    ||||| ||| | |||||||||||||||||| |||||||||||||||||||||||||||||||    
T  32240659 gtgaaccaatagaagaagaaaaatcaaaggttgatcaataaaaacaggtagaaaaaagatat 32240720  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 184
Target Start/End: Original strand, 32223351 - 32223439
Alignment:
Q  99 aatcaacaatttataagtttaacggaactatgtgaatcaacataag--aagaaaaatcaaagg-tgatcaataaaaacaggtagaaaaa 184  Q
    |||||||||||||||||||||||||||||| | ||| ||||| |||  || |||||||| ||| ||||||||||||||| |||||||||    
T  32223351 aatcaacaatttataagtttaacggaactaggagaaccaacagaagaaaaaaaaaatcataggttgatcaataaaaacatgtagaaaaa 32223439  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 319
Target Start/End: Original strand, 6777142 - 6777183
Alignment:
Q  278 actttttacagcggaagctgccgctaaggaggtgacaagaca 319  Q
    ||||||||||||||| ||||||||||||||| ||||||||||    
T  6777142 actttttacagcggaggctgccgctaaggagctgacaagaca 6777183  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 273
Target Start/End: Original strand, 32240728 - 32240769
Alignment:
Q  232 aattaaaaactttccttttaatatgtcagcatatgaggagct 273  Q
    ||||||||||||  ||||||||||||||| ||||||||||||    
T  32240728 aattaaaaacttcgcttttaatatgtcagtatatgaggagct 32240769  T

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Target: scaffold0251 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 17865 - 17816
Alignment:
Q  278 actttttacagcggaagctgccgctaaggaggtgacaagacatggtgctg 327  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||    
T  17865 actttttacagcggaggctgccgctaaggagctgacaagacatggtgctg 17816  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 131
Target Start/End: Original strand, 40879070 - 40879171
Alignment:
Q  30 atcaagagccaagttaaactaagatgcaagcaatttcaagcacatgtgtaacctaacttcagtaagtcgaatcaacaatttataagtttaacggaactat 129  Q
    ||||||||||| ||| ||||||||||  | ||| |||||||||| | |||||| |||||||| ||||| ||||||||||||| |||||  | ||||||||    
T  40879070 atcaagagccaggttgaactaagatggcaacaaattcaagcacaggagtaacccaacttcagcaagtctaatcaacaatttacaagttcgatggaactat 40879169  T
Q  130 gt 131  Q
    ||    
T  40879170 gt 40879171  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 278 - 332
Target Start/End: Complemental strand, 31117790 - 31117736
Alignment:
Q  278 actttttacagcggaagctgccgctaaggaggtgacaagacatggtgctgttcat 332  Q
    ||||||||||||||| |||| ||||||||||||| ||||||| ||||||| ||||    
T  31117790 actttttacagcggaggctgtcgctaaggaggtggcaagacagggtgctgctcat 31117736  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 278 - 327
Target Start/End: Complemental strand, 42706036 - 42705987
Alignment:
Q  278 actttttacagcggaagctgccgctaaggaggtgacaagacatggtgctg 327  Q
    ||||||||||||||| ||||||||||||||| |||||||| | |||||||    
T  42706036 actttttacagcggaggctgccgctaaggagctgacaagatagggtgctg 42705987  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 326
Target Start/End: Complemental strand, 32308666 - 32308618
Alignment:
Q  278 actttttacagcggaagctgccgctaaggaggtgacaagacatggtgct 326  Q
    ||||||||||||||| ||||||| ||||||| |||||||| | ||||||    
T  32308666 actttttacagcggaggctgccggtaaggagctgacaagatagggtgct 32308618  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 35013692 - 35013740
Alignment:
Q  278 actttttacagcggaagctgccgctaaggaggtgacaagacatggtgct 326  Q
    ||||||||||||||| ||||||| ||||||| |||||||||| ||||||    
T  35013692 actttttacagcggaggctgccggtaaggagctgacaagacagggtgct 35013740  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 131
Target Start/End: Complemental strand, 9624553 - 9624450
Alignment:
Q  30 atcaagagccaagttaaactaagatgcaagcaatttcaagcacat--gtgtaacctaacttcagtaagtcgaatcaacaatttataagtttaacggaact 127  Q
    ||||||||||  ||| ||||||||||   ||||||||||||||||  | |||||| |||||||| ||||| ||||||| ||||| |||||  | ||||||    
T  9624553 atcaagagccgggttgaactaagatggctgcaatttcaagcacatgagagtaacccaacttcagcaagtctaatcaactatttacaagttcgatggaact 9624454  T
Q  128 atgt 131  Q
    ||||    
T  9624453 atgt 9624450  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 327
Target Start/End: Original strand, 2742317 - 2742366
Alignment:
Q  278 actttttacagcggaagctgccgctaaggaggtgacaagacatggtgctg 327  Q
    ||||||||||| ||| ||||||||||||||| |||||||| | |||||||    
T  2742317 actttttacagaggaggctgccgctaaggagatgacaagatagggtgctg 2742366  T

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