View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20841_high_7 (Length: 314)

Name: NF20841_high_7
Description: NF20841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20841_high_7
NF20841_high_7
[»] chr4 (44 HSPs)
chr4 (67-284)||(27411473-27411690)
chr4 (41-284)||(27571503-27571746)
chr4 (41-284)||(27419088-27419331)
chr4 (60-265)||(27421971-27422176)
chr4 (55-284)||(27414321-27414550)
chr4 (60-284)||(27567154-27567378)
chr4 (60-284)||(27424531-27424755)
chr4 (138-284)||(27556396-27556542)
chr4 (139-285)||(27478899-27479045)
chr4 (139-285)||(27485959-27486105)
chr4 (187-284)||(27506724-27506821)
chr4 (186-285)||(27412689-27412788)
chr4 (139-281)||(27527139-27527281)
chr4 (145-284)||(27486967-27487106)
chr4 (187-285)||(27425838-27425936)
chr4 (203-285)||(27563362-27563444)
chr4 (210-284)||(27595434-27595508)
chr4 (188-284)||(27444811-27444907)
chr4 (188-284)||(27557516-27557612)
chr4 (188-275)||(27431174-27431261)
chr4 (145-284)||(27513793-27513932)
chr4 (190-281)||(27585717-27585808)
chr4 (190-285)||(27415650-27415745)
chr4 (145-284)||(27526129-27526268)
chr4 (203-285)||(27468343-27468425)
chr4 (203-285)||(27475595-27475677)
chr4 (203-285)||(27503964-27504046)
chr4 (203-285)||(27514933-27515015)
chr4 (203-285)||(27524566-27524648)
chr4 (143-284)||(27559257-27559398)
chr4 (205-285)||(27490004-27490084)
chr4 (180-284)||(27501336-27501440)
chr4 (145-284)||(27476671-27476810)
chr4 (145-284)||(27479885-27480024)
chr4 (145-284)||(27505719-27505858)
chr4 (203-285)||(27420450-27420532)
chr4 (203-285)||(27423264-27423346)
chr4 (139-277)||(27497346-27497484)
chr4 (203-285)||(27570065-27570147)
chr4 (138-274)||(27446124-27446260)
chr4 (145-284)||(27498399-27498538)
chr4 (216-275)||(27554364-27554423)
chr4 (187-284)||(27502824-27502921)
chr4 (205-285)||(27508896-27508976)
[»] chr5 (3 HSPs)
chr5 (145-285)||(1756773-1756913)
chr5 (130-275)||(1756021-1756166)
chr5 (145-284)||(1754258-1754397)
[»] chr3 (11 HSPs)
chr3 (139-236)||(38032260-38032357)
chr3 (139-281)||(38038525-38038667)
chr3 (139-284)||(50913474-50913619)
chr3 (145-285)||(55084770-55084910)
chr3 (139-236)||(38027433-38027530)
chr3 (139-284)||(38035033-38035178)
chr3 (145-285)||(38024891-38025031)
chr3 (145-285)||(38031343-38031483)
chr3 (145-285)||(50911885-50912025)
chr3 (187-281)||(38043929-38044023)
chr3 (205-285)||(50910004-50910084)
[»] chr8 (3 HSPs)
chr8 (139-281)||(21608235-21608377)
chr8 (243-285)||(21607312-21607354)
chr8 (226-274)||(21634608-21634656)


Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 67 - 284
Target Start/End: Complemental strand, 27411690 - 27411473
Alignment:
Q  67 atgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtgt 166  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27411690 atgggtttccgcatagcaaagcttattagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctcgcagtct 27411591  T
Q  167 atgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggata 266  Q
    ||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  27411590 atgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggata 27411491  T
Q  267 tgatcatcccatgggtgg 284  Q
    ||||||||| ||||||||    
T  27411490 tgatcatcctatgggtgg 27411473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 41 - 284
Target Start/End: Original strand, 27571503 - 27571746
Alignment:
Q  41 gtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttga 140  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  27571503 gtgaggaaccataaatactaaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttga 27571602  T
Q  141 agtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattacta 240  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  |||||||||||||||    
T  27571603 agtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattacta 27571702  T
Q  241 aatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  27571703 aatcaatcagaagaagaatttggatatgatcatccaatgggtgg 27571746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 41 - 284
Target Start/End: Complemental strand, 27419331 - 27419088
Alignment:
Q  41 gtgaggaaccataaataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttga 140  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||    
T  27419331 gtgaggagccatacataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagagactgccaagggacttga 27419232  T
Q  141 agtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattacta 240  Q
    |||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||| ||||||| |||| ||| ||||  |||||||||||||||    
T  27419231 agtcccaaaaggctatctcgcagtctatgttggagatagaatgaggcggttcgtgattccagtatcatatttgagccagccatcgtttcaagaattacta 27419132  T
Q  241 aatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||||| |||||||||||||||||||||||||||| ||||||||    
T  27419131 aatcaatcagaagaagaatttggatatgatcatccaatgggtgg 27419088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 60 - 265
Target Start/End: Complemental strand, 27422176 - 27421971
Alignment:
Q  60 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 159  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||| |||| ||||||||||||| |||||||||||||||||||||||    
T  27422176 aaaaacaatgggtttccgcatagcaaaacttatcagaatgccatcattttcctcaacgcaagcatctaccaagggatttgaagtcccaaaaggctatctc 27422077  T
Q  160 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 259  Q
    ||||| |||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27422076 gcagtctatgttggagatagaatgaaacggttcgtgattccagtatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 27421977  T
Q  260 ttggat 265  Q
    ||||||    
T  27421976 ttggat 27421971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 55 - 284
Target Start/End: Complemental strand, 27414550 - 27414321
Alignment:
Q  55 ataataaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggct 154  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||||||||||||   |||||||| ||||| ||||||| ||||||| ||||||||||    
T  27414550 ataaaaaaaacaatgggtttccgcatagcaaagcttatcagaaagccatcattttcgtcaacacaagcatctagcaagggatttgaagtgccaaaaggct 27414451  T
Q  155 atctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaaga 254  Q
    |||| ||||| || ||||| |||| |||||||||||||||||||||  ||||||||||||||||||| | |||||||||||||||||||||| |||||||    
T  27414450 atcttgcagtctacgttggagataaaatgagacggtttgtgattcctgtatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaaga 27414351  T
Q  255 agaatttggatatgatcatcccatgggtgg 284  Q
    ||||||||||||||||||||| ||||||||    
T  27414350 agaatttggatatgatcatccaatgggtgg 27414321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 60 - 284
Target Start/End: Original strand, 27567154 - 27567378
Alignment:
Q  60 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 159  Q
    |||||||||||||||||| ||||| |   |||||| || | |||||||||||||||| |||| ||||| ||||||| |||||||||||||||||||||||    
T  27567154 aaaaacaatgggtttccgtatagccagtattatcaaaagggcatcattttccaaaactcaaggatctagcaagggatttgaagtcccaaaaggctatctc 27567253  T
Q  160 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 259  Q
    ||||| |||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||  ||||||||||||||||||||| ||||||||||||    
T  27567254 gcagtctatgttggagatagaatgagacggttcgtgattccagtatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaat 27567353  T
Q  260 ttggatatgatcatcccatgggtgg 284  Q
    |||| ||||||||||| ||||||||    
T  27567354 ttggttatgatcatccaatgggtgg 27567378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 60 - 284
Target Start/End: Complemental strand, 27424755 - 27424531
Alignment:
Q  60 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttccaaaacacaagaatctaccaagggacttgaagtcccaaaaggctatctc 159  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| |||||  || ||| | |||||||||||||||||||||    
T  27424755 aaaaacaatgggtttccgcatagcaaagcttatcagaatgccatcattttcgtcaacacaagcatctagtaaaggattcgaagtcccaaaaggctatctc 27424656  T
Q  160 gcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaat 259  Q
    ||||| |||||||| |||  |||||| ||||||||||||||| ||||||||||||||||||| | |||||||||||| ||||||||| | ||||||||||    
T  27424655 gcagtctatgttggagatcaaatgaggcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaat 27424556  T
Q  260 ttggatatgatcatcccatgggtgg 284  Q
     ||||||||||||||| ||||||||    
T  27424555 atggatatgatcatccaatgggtgg 27424531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 138 - 284
Target Start/End: Complemental strand, 27556542 - 27556396
Alignment:
Q  138 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 237  Q
    ||||||||||||||||||||||||||| |||||||| || | |||||  || |||||||||||  | ||||  ||||||||||| | |||||||||||||    
T  27556542 tgaagtcccaaaaggctatctcgcagtttatgttggagaaaaaatgaagcgatttgtgattcccatttcattattgaaccaaccttcatttcaagaatta 27556443  T
Q  238 ctaaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    ||| |||||||||||||||||||||||||||||||| | ||||||||    
T  27556442 ctacatcaagcagaagaagaatttggatatgatcattctatgggtgg 27556396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 27479045 - 27478899
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27479045 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27478946  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||    
T  27478945 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggc 27478899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 139 - 285
Target Start/End: Complemental strand, 27486105 - 27485959
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    ||||| ||||| |||||| | |||||||||||||| || | |  ||  ||||||||  | ||| |||||||||||||||||||||| ||||||||||| |    
T  27486105 gaagttccaaagggctatgttgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgc 27486006  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    || ||||||| ||||||||||||||||||||||||||||||||||||    
T  27486005 tacatcaagcggaagaagaatttggatatgatcatcccatgggtggc 27485959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 187 - 284
Target Start/End: Original strand, 27506724 - 27506821
Alignment:
Q  187 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    ||||||||||| ||| |||||||||| ||||||||||| ||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||    
T  27506724 cggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaatttggatatgatcatcccatgggtgg 27506821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 186 - 285
Target Start/End: Original strand, 27412689 - 27412788
Alignment:
Q  186 acggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||| | | |||||| |||||||| ||||||||||||||||| |||||||||    
T  27412689 acggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggc 27412788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 27527139 - 27527281
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    ||||| ||||| |||||||| || ||||||||||| |||| |  || |||||||||||| ||| ||||| |||| ||||||||||  |||| ||| || |    
T  27527139 gaagtaccaaagggctatcttgcggtgtatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgc 27527238  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatcccatggg 281  Q
    | | |||||| || ||||| |||||||||||||||||||||||    
T  27527239 tgagtcaagctgaggaagagtttggatatgatcatcccatggg 27527281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 27486967 - 27487106
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||| || ||||||||||| ||||||||||  |||||||||||  | || |    
T  27486967 ccaaagggatatctagcagtgtacgtaggagagaaaatgaagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaacc 27487066  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||| |||||| |||||| |||||||||||| ||||||||    
T  27487067 aagctgaagaacaatttgaatatgatcatccaatgggtgg 27487106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 187 - 285
Target Start/End: Original strand, 27425838 - 27425936
Alignment:
Q  187 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||| |||||| ||| ||||||||||||||||||||| ||||||||| ||| | | ||||   || ||||| |||||||||||||||||||||||||||    
T  27425838 cggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggc 27425936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 27563444 - 27563362
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||||||||||||| |||| |||||||| || || | |||||| |||||||| ||||||||||||||||| |||||||||    
T  27563444 tatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagagtttggatatgatcatccaatgggtggc 27563362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 210 - 284
Target Start/End: Original strand, 27595434 - 27595508
Alignment:
Q  210 cttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||||||| ||||||||||||||||||||||| |||||||||| |||| |||||||   ||||||||||||||||    
T  27595434 cttgaaccgaccattatttcaagaattactaagtcaagcagaaaaagagtttggattcaatcatcccatgggtgg 27595508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 284
Target Start/End: Complemental strand, 27444907 - 27444811
Alignment:
Q  188 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||||||||| ||| |||||||||||| |||| ||| ||||||||||||| | |||||||| || ||| |||| |||||||| ||||| ||||||||    
T  27444907 ggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaattcggatatgaccatccaatgggtgg 27444811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 284
Target Start/End: Original strand, 27557516 - 27557612
Alignment:
Q  188 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||||||||| ||| | |||||||| |||||||||| |||||||||||| || |||||||| || ||| |||||| ||||| |||||| ||||||||    
T  27557516 ggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttgaatatgttcatccaatgggtgg 27557612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 188 - 275
Target Start/End: Complemental strand, 27431261 - 27431174
Alignment:
Q  188 ggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcc 275  Q
    |||||||||| ||| ||||||||||||||||||| | ||||||||||||  | |||||||| || ||| ||||||||||||| |||||    
T  27431261 ggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaatttggatatgaccatcc 27431174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 27513932 - 27513793
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    |||||||| ||||| ||||||||||| || || | |||||  ||||||||||| ||| ||||||||||||||||| | |  || ||||||||  | || |    
T  27513932 ccaaaaggatatctagcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaacc 27513833  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||| |||||| ||| || |||||||||||| ||||||||    
T  27513832 aagctgaagaacaatatgaatatgatcatccaatgggtgg 27513793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 190 - 281
Target Start/End: Original strand, 27585717 - 27585808
Alignment:
Q  190 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatggg 281  Q
    |||||||| ||  |||||||||||||||||||||| |||||||| ||  | | |||||| |||||||| ||||||||||||||||| |||||    
T  27585717 tttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatgatcatccaatggg 27585808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 190 - 285
Target Start/End: Original strand, 27415650 - 27415745
Alignment:
Q  190 tttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||||||| ||  |||||||||||||||||||||  |||||||| ||  | | |||||| || ||||| ||||||||||||||| |||||||||||    
T  27415650 tttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagagtttggatatgatcattccatgggtggc 27415745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 27526268 - 27526129
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | |  |    
T  27526268 ccaaagggatatctagcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagcc 27526169  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||| || ||| |||||| |||||||||||| | ||||||    
T  27526168 aagctgaggaacaatttgaatatgatcatccaacgggtgg 27526129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 27468425 - 27468343
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||||||||| |||||||| | ||||||||| ||  | | |||| | || |||||||||||||||||||||||||||||||||    
T  27468425 tatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggc 27468343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 27475677 - 27475595
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||||| || ||||| |||||||||||||||||||||||||||    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggc 27475595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 27503964 - 27504046
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||||||||||||||| | ||||||||| ||  | | |||||| || ||||| ||||||||||||||||| |||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggc 27504046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 27514933 - 27515015
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||||||||| ||||| | ||||||||| ||  | | |||| | || |||||||||||||||||||||||||||||||||    
T  27514933 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggatatgatcatcccatgggtggc 27515015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 27524566 - 27524648
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||| ||||||||||| | ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggc 27524648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 284
Target Start/End: Complemental strand, 27559398 - 27559257
Alignment:
Q  143 tcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaa 242  Q
    |||||||||||||||||||||| |||||||| || | |||||   | ||| |||||||  | ||||  ||||| ||| | | ||||||| | ||| |||     
T  27559398 tcccaaaaggctatctcgcagtttatgttggagacaaaatgaagagatttctgattcctatttcattattgaatcaatcttcatttcaatagttattaag 27559299  T
Q  243 tcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
     ||| |||||||||| ||||||||||||||||| ||||||||    
T  27559298 ccaatcagaagaagagtttggatatgatcatccaatgggtgg 27559257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 27490004 - 27490084
Alignment:
Q  205 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||||||| ||| |||||| ||||||||| ||  | |||||||| || ||||| ||||||||||||||||| |||||||||    
T  27490004 tcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggatatgatcatccaatgggtggc 27490084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 180 - 284
Target Start/End: Original strand, 27501336 - 27501440
Alignment:
Q  180 aatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatg 279  Q
    ||||| |||||||||||| ||| |||||||||| ||||||||||| |||||||| ||  | || ||||| || ||| |||||| ||| |||||||| | |    
T  27501336 aatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaatttgaatacgatcatccaacg 27501435  T
Q  280 ggtgg 284  Q
    |||||    
T  27501436 ggtgg 27501440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 27476671 - 27476810
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| || ||||| |||||||||||||| || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| |||||| | || |  |    
T  27476671 ccaaagggatatctagcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagcc 27476770  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    ||   || ||| |||||| |||||||||||| ||||||||    
T  27476771 aaagtgaggaacaatttgaatatgatcatccaatgggtgg 27476810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 27479885 - 27480024
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    |||||||||||||| ||||| || || || || | |||||  || |||||||||||  ||||||||||||||||| ||| ||| ||| | ||  | || |    
T  27479885 ccaaaaggctatctagcagtatacgtaggagagaaaatgaagcgttttgtgattcctgtatcatacttgaaccaaacatcattccaaaagttgttgaacc 27479984  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||| || ||| |||||| |||||||||||| ||||||||    
T  27479985 aagctgaggaacaatttgaatatgatcatccaatgggtgg 27480024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 27505858 - 27505719
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| || ||||| |||||||| || || || | |||||  ||||||||||||||  ||||||||||||||||| | | ||| ||||||||  | || |    
T  27505858 ccaaaggggtatctagcagtgtacgtaggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgaacc 27505759  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||| || ||| |||||| |||||| ||||| ||||||||    
T  27505758 aagctgaggaacaatttgaatatgaccatccaatgggtgg 27505719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 27420450 - 27420532
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||||||||||| |||||| | ||||||||  || || | |||||  || ||||| |||||||||||||||||||||||||||    
T  27420450 tatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagagtttggatatgatcatcccatgggtggc 27420532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 285
Target Start/End: Original strand, 27423264 - 27423346
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||||||||||||||| | ||||||||||||  | | |||||| || ||||| ||||| ||  |||||||||||||||||    
T  27423264 tatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttggttacaatcatcccatgggtggc 27423346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 139 - 277
Target Start/End: Complemental strand, 27497484 - 27497346
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    ||||| ||||| |||||| | |||||||||||||| |||| |   |  ||||||||||| ||  | |||||||| ||||||||||| |||||| | ||      
T  27497484 gaagttccaaagggctatgttgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgt 27497385  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatccca 277  Q
    | | |||||| || ||||| |||||||||||||||||||    
T  27497384 tgagtcaagctgaggaagagtttggatatgatcatccca 27497346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 285
Target Start/End: Complemental strand, 27570147 - 27570065
Alignment:
Q  203 tatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||||||||| | |||||| | ||||||||| || || | |||||| || ||||| || ||||||||||||||||||||||||    
T  27570147 tatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagagttcggatatgatcatcccatgggtggc 27570065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 274
Target Start/End: Original strand, 27446124 - 27446260
Alignment:
Q  138 tgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatta 237  Q
    ||||||||||||||||||||| || || |||||||| || | |||||  || ||||||||||||   ||||  ||||| ||||| | ||||||||| |      
T  27446124 tgaagtcccaaaaggctatcttgcggtttatgttggagaaaaaatgaagcgatttgtgattccaacttcattattgaatcaaccttcatttcaagagtcg 27446223  T
Q  238 ctaaatcaagcagaagaagaatttggatatgatcatc 274  Q
     |||  ||| |||||||||| |||| |||||||||||    
T  27446224 ttaagccaatcagaagaagagtttgaatatgatcatc 27446260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 284
Target Start/End: Original strand, 27498399 - 27498538
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| || ||||| ||||| |||||||| ||   ||||| ||| |||||||| ||  |||||||||||||||||||||  || ||||| ||  | || |    
T  27498399 ccaaagggatatctagcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaacc 27498498  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    |||| || ||| |||| | |||||||||||| ||||||||    
T  27498499 aagccgaggaacaattcgaatatgatcatccaatgggtgg 27498538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 275
Target Start/End: Original strand, 27554364 - 27554423
Alignment:
Q  216 ccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcc 275  Q
    ||||||||  ||||||||||| || |||||||| || ||| |||||||||||||||||||    
T  27554364 ccaaccatcgtttcaagaattgctgaatcaagctgaggaacaatttggatatgatcatcc 27554423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 284
Target Start/End: Complemental strand, 27502921 - 27502824
Alignment:
Q  187 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    ||||||||||||||| | ||||| ||||| ||| | | ||||||||| || || |  ||||| |  ||||||||||||||||| ||||| ||||||||    
T  27502921 cggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtgg 27502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 27508896 - 27508976
Alignment:
Q  205 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||| ||||||||||| | ||||||||| ||  | ||||| || || ||||| ||||||||||||||||| | |||||||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggc 27508976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 145 - 285
Target Start/End: Complemental strand, 1756913 - 1756773
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| |||||||| |||||| ||||||| || | |  ||  ||||||||||| ||| |||||||||||||||||||||  |||||| | ||  | | ||    
T  1756913 ccaaagggctatcttgcagtgaatgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtc 1756814  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    |||| ||||||||||||||||||||||| ||||||||||||    
T  1756813 aagctgaagaagaatttggatatgatcaccccatgggtggc 1756773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 275
Target Start/End: Complemental strand, 1756166 - 1756021
Alignment:
Q  130 aagggacttgaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttc 229  Q
    |||||| ||||||||   |||||||| || ||||| |||||||  ||| ||||||  | | | |||||| || ||||||||||||| ||||| | |||||    
T  1756166 aagggatttgaagtctagaaaggctaccttgcagtctatgttgaagatcgaatgaagcagatagtgatttcaatatcatacttgaatcaaccttaatttc 1756067  T
Q  230 aagaattactaaatcaagcagaagaagaatttggatatgatcatcc 275  Q
    |||||||||||   |||||||||||  ||||  |||||||||||||    
T  1756066 aagaattactatgccaagcagaagagcaattcagatatgatcatcc 1756021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 145 - 284
Target Start/End: Complemental strand, 1754397 - 1754258
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    |||||||| ||||| || || |||||||| ||   |||||  ||||||||||| ||  ||||||||||||||||| | | ||||||| |||| |||||      
T  1754397 ccaaaaggatatctagctgtatatgttggagaagaaatgaagcggtttgtgatccccgtatcatacttgaaccaatcgtcatttcaaaaattgctaaaca 1754298  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    || | || ||| | |||| |||||||||||| ||||||||    
T  1754297 aatctgaggaacagtttgaatatgatcatccgatgggtgg 1754258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 38032260 - 38032357
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatt 236  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||| |||||||| |||||| ||||||  | || ||||||||||||||    
T  38032260 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggtttatgattccagtatcattcttgaatgagcctttatttcaagaatt 38032357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 38038525 - 38038667
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    ||||||||||||||| |||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38038525 gaagtcccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38038624  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatcccatggg 281  Q
    | |  ||||| ||||| ||||| || |||  |||||| |||||    
T  38038625 ttagccaagctgaagaggaattcggttattgtcatccaatggg 38038667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 139 - 284
Target Start/End: Original strand, 50913474 - 50913619
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    |||||||||||||||||||| |||||||||||||| || | |||||   ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  50913474 gaagtcccaaaaggctatcttgcagtgtatgttggagagaaaatgaagaggttcttgattccaatatcattcttgaatgagcctttatttcaagaattgc 50913573  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    | |  ||||| ||||| |||||||| ||   |||||| ||||||||    
T  50913574 ttagccaagctgaagaggaatttggctactgtcatccaatgggtgg 50913619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 145 - 285
Target Start/End: Original strand, 55084770 - 55084910
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    |||||||| | ||| |||||||||||||| || | |||||  ||||||||||| ||  | || |||||||||||||||| ||||||||| ||  | | ||    
T  55084770 ccaaaagggtgtcttgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtc 55084869  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
      || || |||||||||||||| |||||||| |||||||||    
T  55084870 gggcggaggaagaatttggatacgatcatccaatgggtggc 55084910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 236
Target Start/End: Original strand, 38027433 - 38027530
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaatt 236  Q
    ||||| ||||||||| |||| |||||||||||||| || | ||||||| ||||| |||||||  |||||| ||||||  | || ||||||||||||||    
T  38027433 gaagttccaaaaggccatcttgcagtgtatgttggagagaaaatgagaaggtttatgattcccgtatcattcttgaatgagcctttatttcaagaatt 38027530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 284
Target Start/End: Original strand, 38035033 - 38035178
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    ||||||||||||||| |||| || ||||||||||| || | |||| || ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  38035033 gaagtcccaaaaggccatcttgcggtgtatgttggagagaaaatgcgaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 38035132  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatcccatgggtgg 284  Q
    | |  ||||| ||||| ||||| || |||  |||||| ||||||||    
T  38035133 ttagccaagctgaagaggaattcggttattgtcatccaatgggtgg 38035178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 285
Target Start/End: Complemental strand, 38025031 - 38024891
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38025031 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38024932  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||| |||||||||||||||||||| || |||||||||    
T  38024931 aagcagaggaagaatttggatatgatcacccaatgggtggc 38024891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 285
Target Start/End: Complemental strand, 38031483 - 38031343
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| |||||||| ||||| |||||||| ||   |||||  |||||||| || ||  | ||||||||||||||| | |  |||||| | ||| | | ||    
T  38031483 ccaaagggctatcttgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtc 38031384  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||| |||||||||||||||||||| || |||||||||    
T  38031383 aagcagaggaagaatttggatatgatcacccaatgggtggc 38031343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 145 - 285
Target Start/End: Complemental strand, 50912025 - 50911885
Alignment:
Q  145 ccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatc 244  Q
    ||||| |||||||| || || |||||||| || |  |||| |||||||||||| ||    ||||||||||||||| | | ||||||| | ||  | | ||    
T  50912025 ccaaagggctatcttgcggtatatgttggagacaagatgaaacggtttgtgatccccaagtcatacttgaaccaagcttcatttcaaaacttgttgagtc 50911926  T
Q  245 aagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||| |||||||||||||||||||| || |||||||||    
T  50911925 aagcagaggaagaatttggatatgatcacccaatgggtggc 50911885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 281
Target Start/End: Original strand, 38043929 - 38044023
Alignment:
Q  187 cggtttgtgattccattatcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatggg 281  Q
    ||||||||||| ||  | ||||||||||| ||| | |  |||||||| || || | ||||||||| ||||||||||||||||||||||| |||||    
T  38043929 cggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatggg 38044023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 205 - 285
Target Start/End: Original strand, 50910004 - 50910084
Alignment:
Q  205 tcatacttgaaccaaccattatttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||||||||||| | | ||||||| | ||  | |||||||  || ||||||||||||||||||||||| |||||||||    
T  50910004 tcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggc 50910084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 281
Target Start/End: Original strand, 21608235 - 21608377
Alignment:
Q  139 gaagtcccaaaaggctatctcgcagtgtatgttggcgatagaatgagacggtttgtgattccattatcatacttgaaccaaccattatttcaagaattac 238  Q
    ||||| |||||||||||||| |||||||||||||| || | ||||||| ||||  |||||||| |||||| ||||||  | || |||||||||||||| |    
T  21608235 gaagttccaaaaggctatcttgcagtgtatgttggagagaaaatgagaaggttcatgattccaatatcattcttgaatgagcctttatttcaagaattgc 21608334  T
Q  239 taaatcaagcagaagaagaatttggatatgatcatcccatggg 281  Q
    | |  ||||| ||||| ||||| || |||  |||||| |||||    
T  21608335 ttagccaagctgaagaggaattcggttattgtcatccaatggg 21608377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 243 - 285
Target Start/End: Complemental strand, 21607354 - 21607312
Alignment:
Q  243 tcaagcagaagaagaatttggatatgatcatcccatgggtggc 285  Q
    ||||||||| |||||||||||||||||||| || |||||||||    
T  21607354 tcaagcagaggaagaatttggatatgatcacccaatgggtggc 21607312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 21634608 - 21634656
Alignment:
Q  226 tttcaagaattactaaatcaagcagaagaagaatttggatatgatcatc 274  Q
    |||||||| || || | ||||||||| ||||||||||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatc 21634656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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