View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20841_high_8 (Length: 309)
Name: NF20841_high_8
Description: NF20841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20841_high_8 |
 | |
|
| [»] scaffold0295 (1 HSPs) |
| | |
|
| [»] scaffold0020 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 281; Significance: 1e-157; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 51457514 - 51457798
Alignment:
| Q |
1 |
acacaaatggtcgcagcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457514 |
acacaaatggtcgcagcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatca |
51457613 |
T |
|
| Q |
101 |
tgctgagttcatatcttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51457614 |
tgctgagttcatatcttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcct |
51457713 |
T |
|
| Q |
201 |
gacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgatg |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
51457714 |
gacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgcggtgattctgtgactaagctccattgtgatg |
51457798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 1 - 277
Target Start/End: Original strand, 51482158 - 51482434
Alignment:
| Q |
1 |
acacaaatggtcgcagcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatca |
100 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||| |
|
|
| T |
51482158 |
acacaaatggtcgcccagattggcttaattggcctcaggttttgaaattgaaagattggcctccttctaatttatttagggaaagtttgcctcgtcattg |
51482257 |
T |
|
| Q |
101 |
tgctgagttcatatcttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||| | || ||| |||||||||||||||||||| || || | ||||||| |
|
|
| T |
51482258 |
tgctgagttcatatcttccttgccgtataaagaatatacagatcctttcaaaggcattcttaaccttgctgtgaagttgcctgaaaatgttctaaagcca |
51482357 |
T |
|
| Q |
201 |
gacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctcca |
277 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
51482358 |
gacatgggcccaaaaacatatattgcttatggatttgctcaggagcttggacgtggtgattctgtgactaagctcca |
51482434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 51498859 - 51499142
Alignment:
| Q |
1 |
acacaaatggtcgcagcgattggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatca |
100 |
Q |
| |
|
||||||| |||||| ||||||||||| |||||| |||| ||||||||||||||||||||||||||| | |||||| | ||| ||| ||||||||| |
|
|
| T |
51498859 |
acacaaaaggtcgccctgattggcttaattggcctcaggttttgaaattgaaagattggcctccttctaacttatttgaagaaagtttgcctcgtcattg |
51498958 |
T |
|
| Q |
101 |
tgctgagttcatatcttccttgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||| ||||||| | ||| ||| ||||||||||| |||||||| || || | ||||||| |
|
|
| T |
51498959 |
tgctgagttcatatcttccttgccgtataaagaatatacagatcctttcaaaggtgttcttaaccttgctgtaaagttgcctgaaaatgttctaaagcca |
51499058 |
T |
|
| Q |
201 |
gacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgat |
284 |
Q |
| |
|
|| ||||| |||| ||||||||||||||||||||||| |||| | || || || |||||||||||||||||||| ||||||||| |
|
|
| T |
51499059 |
gatatgggaccaaaaacatatattgcttatggatttgatcaggaacttgggcggggtgattctgtgactaagcttcattgtgat |
51499142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 21 - 284
Target Start/End: Complemental strand, 30205289 - 30205026
Alignment:
| Q |
21 |
tggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttcct |
120 |
Q |
| |
|
|||||||| |||||| |||| |||||| |||||||||||||||||||| |||||||| ||||| ||| || |||||| |||||||||||||||||||| |
|
|
| T |
30205289 |
tggcttaattggcctaaggttttgaaactgaaagattggcctccttctaatttatttgaggaaagtttgccccgtcattgtgctgagttcatatcttcct |
30205190 |
T |
|
| Q |
121 |
tgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgacatggggccaagaacata |
220 |
Q |
| |
|
|||| | |||||||| ||| ||||||| | |||| ||| |||||||||| ||||||||| | || | || |||| |||||||| |||| |||||| |
|
|
| T |
30205189 |
tgccgttcaaagaatatacagatcctttcaatggtgttctaaaccttgctgcgaagttgcctaaagatgttttacagccagacatgggcccaaaaacata |
30205090 |
T |
|
| Q |
221 |
tattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgat |
284 |
Q |
| |
|
|||||||||||||||||||||| | || || || |||||||||||||||||||||||||||||| |
|
|
| T |
30205089 |
tattgcttatggatttgctcaggagcttgggcggggtgattctgtgactaagctccattgtgat |
30205026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 204
Target Start/End: Original strand, 51440159 - 51440206
Alignment:
| Q |
157 |
ctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgaca |
204 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
51440159 |
ctctcaaccttgctatgaagttgccggattattgtgtaaagccagaca |
51440206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 51440075 - 51440140
Alignment:
| Q |
22 |
ggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttt |
87 |
Q |
| |
|
||||||| |||||| |||||||| ||||||||||||||| ||| |||||||| ||||||||||| |
|
|
| T |
51440075 |
ggcttaattggccttgcgtgttgaatttgaaagattggccttcttttgatttatgtcaggaacttt |
51440140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 21 - 281
Target Start/End: Original strand, 43161858 - 43162118
Alignment:
| Q |
21 |
tggcttaaatggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttcct |
120 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
43161858 |
tggcttaattggcctgaggtgttgaaattgaaagattggcctccttctgatttatttcaggaacgtttacctcgtcatcatgctgagttcataacttcct |
43161957 |
T |
|
| Q |
121 |
tgccttataaagaatacacaaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgacatggggccaagaacata |
220 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43161958 |
tgccttataaagaatatacaaatccatttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgacatggggccaagaacata |
43162057 |
T |
|
| Q |
221 |
tattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgt |
281 |
Q |
| |
|
|||||||||||||||| ||||| |||| ||||| || ||||| |||||||||||||||||| |
|
|
| T |
43162058 |
tattgcttatggatttcctcaggatcttggacgcggggattccgtgactaagctccattgt |
43162118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 42 - 284
Target Start/End: Original strand, 27397543 - 27397785
Alignment:
| Q |
42 |
ttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttccttgccttataaagaatacacaa |
141 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| | ||| |||||| |||||| ||| |||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
27397543 |
ttgaaattgaaagattggcctccttctaaactatttgaagaaagtttaccgcgtcattgtgcggagttcatatcttccttgccatttaaagaatatacaa |
27397642 |
T |
|
| Q |
142 |
atccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttgctca |
241 |
Q |
| |
|
||||||| | ||| |||||||||||||||||||| |||| ||| | | ||||||| |||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
27397643 |
atcctttcaaaggtgctctcaaccttgctgtgaagctgcctgatgaagttctaaagccagacatgggaccaaaaacatatattgcttatggatttgctca |
27397742 |
T |
|
| Q |
242 |
gaatctcggacgtggtgattctgtgactaagctccattgtgat |
284 |
Q |
| |
|
| | || ||||| |||||||| ||||||| ||||||||||||| |
|
|
| T |
27397743 |
ggagcttggacggggtgattcagtgactaggctccattgtgat |
27397785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 205 - 284
Target Start/End: Complemental strand, 20867643 - 20867564
Alignment:
| Q |
205 |
tggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgat |
284 |
Q |
| |
|
|||| |||| |||||||||||||||||||||| |||| | || || || |||||||||||||||||||| ||||||||| |
|
|
| T |
20867643 |
tgggaccaaaaacatatattgcttatggatttcatcaggagcttgggcggggtgattctgtgactaagctacattgtgat |
20867564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0295 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0295
Description:
Target: scaffold0295; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 40 - 280
Target Start/End: Complemental strand, 7058 - 6818
Alignment:
| Q |
40 |
tgttgaaattgaaagattggcctccttctgatttatttcaggaacttttacctcgtcatcatgctgagttcatatcttccttgccttataaagaatacac |
139 |
Q |
| |
|
||||||| ||||||||||||||||||||||| | |||| ||||| ||||||| |||| || |||||| |||||| |||||| |||||||||||||| |
|
|
| T |
7058 |
tgttgaagttgaaagattggcctccttctgaatcatttaaggaatgtttacctaatcattttgaggagttcgtatcttacttgccgtataaagaatacac |
6959 |
T |
|
| Q |
140 |
aaatccttttagtggttctctcaaccttgctgtgaagttgccggattattgtgtaaagcctgacatggggccaagaacatatattgcttatggatttgct |
239 |
Q |
| |
|
| ||||| | ||||||||| | |||||||| |||||||| || ||| ||| ||||||| ||||||||||||| | |||| |||||||||||||||||| |
|
|
| T |
6958 |
acatcctgtaagtggttctattaaccttgccgtgaagtttcctgatggttggctaaagccagacatggggccaaaagcatacattgcttatggatttgct |
6859 |
T |
|
| Q |
240 |
cagaatctcggacgtggtgattctgtgactaagctccattg |
280 |
Q |
| |
|
|| | || ||| ||||||||||||||| ||||||||||| |
|
|
| T |
6858 |
aaggagcttggatttggtgattctgtgacaaagctccattg |
6818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 284
Target Start/End: Original strand, 4299623 - 4299706
Alignment:
| Q |
201 |
gacatggggccaagaacatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgat |
284 |
Q |
| |
|
|||||||| |||| |||||||||||||||||||||| ||||| | || || | ||||||||||| ||||||||| |||||||| |
|
|
| T |
4299623 |
gacatgggcccaaaaacatatattgcttatggattttctcaggagcttgggtggggtgattctgtcactaagctctattgtgat |
4299706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 284
Target Start/End: Complemental strand, 136292 - 136224
Alignment:
| Q |
216 |
acatatattgcttatggatttgctcagaatctcggacgtggtgattctgtgactaagctccattgtgat |
284 |
Q |
| |
|
|||||| |||||||||||||| || || | || || || |||||||| ||||| ||||||||||||||| |
|
|
| T |
136292 |
acatattttgcttatggattttctgaggagcttgggcggggtgattccgtgacaaagctccattgtgat |
136224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University