View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20842_high_2 (Length: 335)
Name: NF20842_high_2
Description: NF20842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20842_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 17 - 291
Target Start/End: Original strand, 1226672 - 1226955
Alignment:
| Q |
17 |
atggtgaagtgattgtatttgggactgaaaggaaacaagacctacattgatgtgcaactcattaaagggacattaatttcacataagtcctacaggtg-- |
114 |
Q |
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| T |
1226672 |
atggtgaagtgattgtatttgggactgaaaggaaacaagacctacattgatgtgcaactcattaaagggacattaatttcacataagtcctacaggtgtg |
1226771 |
T |
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| Q |
115 |
aaacatcatacagacatgttggtaaagtatctttcagctaatttttacaagctattcaggataacttatgataagcacttaattaagctaattatccaaa |
214 |
Q |
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| T |
1226772 |
aaacatcatacagacatgttggtaaagtatctttcagctaatttttacaagctattcaggataacttatgataagcacttaattaagctaattatccaaa |
1226871 |
T |
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| Q |
215 |
cagtggttaaatgtatggattttgttttacaatgaagtgg-------ttatcagaaagcttcaactgctttcaaatcaaccaaa |
291 |
Q |
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| T |
1226872 |
cagtggttaaatgtatggattttgttttgcaatgaagtggtgttttcttatcagaaagtttcaactgctttcaaatcaaccaaa |
1226955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 42 - 110
Target Start/End: Original strand, 1247694 - 1247762
Alignment:
| Q |
42 |
tgaaaggaaacaagacctacattgatgtgcaactcattaaagggacattaatttcacataagtcctaca |
110 |
Q |
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| T |
1247694 |
tgaaaggaaacaagacctacattgatgcacaacttattacgggaacattgattttacataagtcctaca |
1247762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 217
Target Start/End: Original strand, 33500625 - 33500662
Alignment:
| Q |
180 |
ttatgataagcacttaattaagctaattatccaaacag |
217 |
Q |
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| T |
33500625 |
ttatgataagcacttaattaagctgtttatccaaacag |
33500662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 1430719 - 1430683
Alignment:
| Q |
255 |
ttatcagaaagcttcaactgctttcaaatcaaccaaa |
291 |
Q |
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| T |
1430719 |
ttatcagaaagctttaactgttttcaaatcaaccaaa |
1430683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 217
Target Start/End: Complemental strand, 44241779 - 44241750
Alignment:
| Q |
188 |
agcacttaattaagctaattatccaaacag |
217 |
Q |
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| T |
44241779 |
agcacttaattaagctaattatccaaacag |
44241750 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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