View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20842_high_5 (Length: 308)
Name: NF20842_high_5
Description: NF20842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20842_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 29 - 259
Target Start/End: Original strand, 38555830 - 38556060
Alignment:
| Q |
29 |
acaaacatggaacataagttttgtgcaccattgtccagtctccactatattttgactcagtatgaggtctccacgaccaacgtactgcgttagtggtatt |
128 |
Q |
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| T |
38555830 |
acaaacatggaacatgagttttgtgcatcattgtccaatctccactatattttgactcagtatgaggtctccacgaccaacgtactgcgttagtggcatt |
38555929 |
T |
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| Q |
129 |
gacaaagaatcaactcccctctcttagctattatagtctcgcctataacttttggttgcataagaagtcttatcacctaaaagtacactcgtctatctac |
228 |
Q |
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| T |
38555930 |
gacaaagaatcaactcccctctcttagctattatagtctcgcctataactttcgatcgcataagaagtcttatcacctcaaagtacactcatctatctac |
38556029 |
T |
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| Q |
229 |
caaggtcaacttacaaaataattatttttag |
259 |
Q |
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| T |
38556030 |
caaggtcaacttacaaaataattatttttag |
38556060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 38556118 - 38556150
Alignment:
| Q |
255 |
tttagttgctctttgtccaatatatatgatgat |
287 |
Q |
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| T |
38556118 |
tttagttgctctttgtccaatatatatgatgat |
38556150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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