View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20842_high_6 (Length: 304)

Name: NF20842_high_6
Description: NF20842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20842_high_6
NF20842_high_6
[»] chr7 (3 HSPs)
chr7 (22-182)||(29680256-29680409)
chr7 (55-117)||(29685761-29685823)
chr7 (140-182)||(29685703-29685745)


Alignment Details
Target: chr7 (Bit Score: 103; Significance: 3e-51; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 22 - 182
Target Start/End: Complemental strand, 29680409 - 29680256
Alignment:
Q  22 catcatcatcatcatggtccaaatcaagaagtaaaaggaaaggaaaggattgtgttatctcactactacctagtgtgaacacataccctaattagttagn 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||     
T  29680409 catcatcatcatcatggtccaaatcaagaagtaaaaggaaaggaaaggattgtgttatctcactactacctagtgtgaacacataccctaatt-gttag- 29680312  T
Q  122 nnnnnnnnnnnnnngtcacacacagattaagaaatcacaatttgtacccaacaaaatctca 182  Q
                  |||||||||||||||||||||||||||||||||||||||||||||||    
T  29680311 -----tttttttttgtcacacacagattaagaaatcacaatttgtacccaacaaaatctca 29680256  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 55 - 117
Target Start/End: Complemental strand, 29685823 - 29685761
Alignment:
Q  55 aaaggaaaggaaaggattgtgttatctcactactacctagtgtgaacacataccctaattagt 117  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29685823 aaaggaaaggaaaggattgtgttatctcactactacctattgtgaacacataccctaattagt 29685761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 140 - 182
Target Start/End: Complemental strand, 29685745 - 29685703
Alignment:
Q  140 cacacagattaagaaatcacaatttgtacccaacaaaatctca 182  Q
    ||||||||||||||||||||||||||||||||| |||||||||    
T  29685745 cacacagattaagaaatcacaatttgtacccaaaaaaatctca 29685703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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