View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20843_high_2 (Length: 355)
Name: NF20843_high_2
Description: NF20843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20843_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 29 - 346
Target Start/End: Complemental strand, 40483510 - 40483193
Alignment:
| Q |
29 |
aatcgtctcctaagaagactttaagtactgaaagcaacgttcaaatgtttttccaagaaaaacagcaatcttaatatgaggttgaagctagcaagaatca |
128 |
Q |
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| T |
40483510 |
aatcgtctcctaagaagactttaagtactgaaagcaacgttcaaatgtttttccaagaaaaacagcaatcttaatatgagttagaagctagcaagaatca |
40483411 |
T |
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| Q |
129 |
aatgaaatttcagaagacagtataagaagagcagaaaacattaccttcttggatacaagataatcagctcctttgcggcaaagcacacacctgcaacata |
228 |
Q |
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| T |
40483410 |
aatgaaatttcagaagacagtataagaagagcagaaaacaataccttcttggatgcaagataatcagctcttttgcggcaaagcacacacctgcaacata |
40483311 |
T |
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| Q |
229 |
tgcaattgttaatttgttacacaactcaatttcaggagctaagtgcatgtttggattgatagtgaattttgtcaaatcacggtgacaccatgatttcatt |
328 |
Q |
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| T |
40483310 |
tgcaattgttagtttgttacacaactcaatttcaggagctaagtgcatgtttggattgatagtgaattttgtcaaatcacggtgacaccatgatttcatt |
40483211 |
T |
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| Q |
329 |
gaagcttcaaagtataat |
346 |
Q |
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| T |
40483210 |
gaagcttcaaagtataat |
40483193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 328
Target Start/End: Complemental strand, 22533761 - 22533728
Alignment:
| Q |
295 |
ttttgtcaaatcacggtgacaccatgatttcatt |
328 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
22533761 |
ttttgtcaaatcacggtgagaccatgatttcatt |
22533728 |
T |
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