View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20843_high_3 (Length: 336)
Name: NF20843_high_3
Description: NF20843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20843_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 30 - 324
Target Start/End: Complemental strand, 42143374 - 42143080
Alignment:
| Q |
30 |
tagctaacatgcatgcatgcaagttgaagtaaaagtgtacaacatatgtaacagtgtctcaccttgacttcatctaactcaggtcctctaagagcagcaa |
129 |
Q |
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| T |
42143374 |
tagctaacatgcatgcatgcaagttgaagtaaaagtgtacaacatatgtaacagtgtctcaccttgacttcatctaactcaggtcctctaagagcagcaa |
42143275 |
T |
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| Q |
130 |
agtatctaccagcaggaacacttgcattaacagaatcatcatccacaccagaagcaccattgaccttctgagactccaactccttctctattttcctcgg |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42143274 |
agtatctaccagcaggaacacttgcattaacagaatcatcatccacaccagaagcaccattgatcttctgagactccaactccttctctattttcctcgg |
42143175 |
T |
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| Q |
230 |
caacaaagaattctgcttactaagagtagatttcgtcttgaagatactgaaatctcttttatgtccttccaaaccaaacctatttgcccctccta |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42143174 |
caacaaagaattctgcttactaagagtagatttcgtcttgaagatactgaaatctcttttatgtccttccaaaccaaacctatttgcccctccta |
42143080 |
T |
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