View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20843_high_5 (Length: 321)
Name: NF20843_high_5
Description: NF20843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20843_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 266; Significance: 1e-148; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 31 - 307
Target Start/End: Complemental strand, 32942890 - 32942613
Alignment:
| Q |
31 |
aaatcaatgaagttgtgtgt-tttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttct |
129 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942890 |
aaatcaatgaagttgcgtgtgtttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttct |
32942791 |
T |
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| Q |
130 |
ttgccaaaccgcaaataactgaaagaaataaacattagcaagacatatatatatctaaacattttttcacactggtaaatggtaatttatatccaagaat |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942790 |
ttgccaaaccgcaaataactgaaagaaataaacattagcaagacatatatatatctaaacattttttcacactggtaaatggtaatttatatccaagaat |
32942691 |
T |
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| Q |
230 |
aagaataaaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccct |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32942690 |
aagaataaaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccct |
32942613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 31 - 183
Target Start/End: Complemental strand, 32950071 - 32949918
Alignment:
| Q |
31 |
aaatcaatgaagttgtgtgt-tttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttct |
129 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32950071 |
aaatcaatgaagttgcgtgtgtttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttct |
32949972 |
T |
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| Q |
130 |
ttgccaaaccgcaaataactgaaagaaataaacattagcaagacatatatatat |
183 |
Q |
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| T |
32949971 |
ttgccaaaccgcaaataactgaaagaaataaacattagcaaatgatatatatat |
32949918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 211 - 307
Target Start/End: Complemental strand, 32948828 - 32948732
Alignment:
| Q |
211 |
gtaatttatatccaagaataagaataaaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccct |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32948828 |
gtaatttatatccaagaataagaataaaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctccct |
32948732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 305
Target Start/End: Complemental strand, 32935138 - 32935057
Alignment:
| Q |
224 |
aagaataagaataaaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctcc |
305 |
Q |
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| T |
32935138 |
aagaattagaagaaaacctatgaacatagaggtcatattgctttcccttgagtacaagcttctttatatatggatcctctcc |
32935057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 157
Target Start/End: Complemental strand, 32912250 - 32912144
Alignment:
| Q |
51 |
tttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttctttgccaaaccgcaaataactg |
150 |
Q |
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| T |
32912250 |
tttaccatcaaatccagctaaaaggcaagggttaggagaactacgagtgaccttcataatctcagctcgagatgcttctctaccaaagtgtaagtaactg |
32912151 |
T |
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| Q |
151 |
aaagaaa |
157 |
Q |
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||||||| |
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| T |
32912150 |
aaagaaa |
32912144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 32924018 - 32923950
Alignment:
| Q |
237 |
aaacctgtgaacatagaggtaatatttctttcctttaagtacaatcttttttatgtatggatcctctcc |
305 |
Q |
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|||||| ||||||||||| | |||||| ||||| || ||||||| ||| || ||||||||||| ||||| |
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| T |
32924018 |
aaacctatgaacatagagatcatatttttttcccttgagtacaagcttcttaatgtatggatcttctcc |
32923950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 11824683 - 11824605
Alignment:
| Q |
51 |
tttaccatgatagccagctaaaatgcaaggattaggagaaccattagtgactttcaaaatttcagcacgagatgcttct |
129 |
Q |
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| T |
11824683 |
tttaccatcaaatccagctaaaatgcaagggttaggagaattatgagtgaccttcaaaatctcagcccgagatgcttct |
11824605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 10329494 - 10329527
Alignment:
| Q |
236 |
aaaacctgtgaacatagaggtaatatttctttcc |
269 |
Q |
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||||||||||||||||||||||||||||| |||| |
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| T |
10329494 |
aaaacctgtgaacatagaggtaatatttccttcc |
10329527 |
T |
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