View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20844_high_1 (Length: 494)
Name: NF20844_high_1
Description: NF20844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20844_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 431; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 26 - 464
Target Start/End: Original strand, 2113540 - 2113978
Alignment:
| Q |
26 |
catcatcatgtagattagtccttttcgctagtccaaacctcataagaagcgcagccgaatcttcttcgtctttccacgtccgcgacgttacaaaacaact |
125 |
Q |
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| T |
2113540 |
catcatcatgtagattagtccttttcgctagtccaaacctcacaagaagcgcggccgaatcttcttcgtctttccacgtccgcgacgttacaaaacaact |
2113639 |
T |
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| Q |
126 |
cgatgttaggctcatacagtttgtccacttcttgagatgattttcatttgttgataaactctttgctgcattggctaacaaatttgctgaaactggagca |
225 |
Q |
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| T |
2113640 |
cgatgttaggctcatacagtttgtccacttcttgagatgattttcatttgttgataaactctttgctgcattggctaacaaatttgctgaaactggagca |
2113739 |
T |
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| Q |
226 |
ggagaaaaccaaccaccgacaagaagcattcttatagcaagaaaattccctttttctttagttttctccaaagtttctaaacaaaaaaggagtgtcttca |
325 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113740 |
ggagaaaaccaaccaccgacaagaagcattcttatagcaagaaaattccctttttctttagttttctccaaagtttctaaacaaaaaaggagtgtcttca |
2113839 |
T |
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| Q |
326 |
tgaggaaaggattgttcttgcaccattgttcttgtgccatactaatacaacaagatcttgaatctgcattgagtgaaacttggtttatagcctcaaagag |
425 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2113840 |
tgaggaaaggattgttcttgcaccattgttcttgtgccatactaatacaacaagatcttgaatctgcattgagtgaaacttggtttatagcctcaaagag |
2113939 |
T |
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| Q |
426 |
tgcagaaggactaattccaagttctgataacaatgaacc |
464 |
Q |
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| T |
2113940 |
tgcagaaggactaattccaagttctgataacaatgaacc |
2113978 |
T |
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