View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20844_high_2 (Length: 346)

Name: NF20844_high_2
Description: NF20844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20844_high_2
NF20844_high_2
[»] chr7 (12 HSPs)
chr7 (160-319)||(36221990-36222144)
chr7 (160-317)||(36217999-36218151)
chr7 (166-317)||(35938858-35939004)
chr7 (30-95)||(36221861-36221926)
chr7 (169-317)||(35976975-35977118)
chr7 (169-317)||(35998387-35998530)
chr7 (186-317)||(32727098-32727224)
chr7 (186-317)||(35946312-35946438)
chr7 (169-317)||(35951951-35952094)
chr7 (166-298)||(35981560-35981687)
chr7 (166-298)||(36002972-36003099)
chr7 (30-94)||(36217870-36217934)
[»] chr1 (2 HSPs)
chr1 (186-317)||(18117587-18117713)
chr1 (169-316)||(18125241-18125383)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 160 - 319
Target Start/End: Original strand, 36221990 - 36222144
Alignment:
Q  160 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||     |||||||| ||||||||||||||||||||||    
T  36221990 tgtgctggagttccgctggctgtcaaaacattaggaagttctctgttatcaaaatttgatttaa-----ataagtggatattcgtaagagaccatgagat 36222084  T
Q  260 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36222085 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgatga 36222144  T

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Target: chr7; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 160 - 317
Target Start/End: Original strand, 36217999 - 36218151
Alignment:
Q  160 tgtgctggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagat 259  Q
    ||||||||||||||||||||||| | |||  ||||||||||||| |||||||||||||||||| ||     |||||| |||| |||||||||||||||||    
T  36217999 tgtgctggagttccgctggctgtgagaacggtaggaagttctctgttctcaaaatttgatttagat-----aagtggttatttgtaagagaccatgagat 36218093  T
Q  260 ttggaacttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
     ||||| |||||||| ||||||| ||||||||||||||| ||||||||||||||||||    
T  36218094 atggaatttagaacagaagaaagatgatattttacctgctttaaaattaagctatgat 36218151  T

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Target: chr7; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 166 - 317
Target Start/End: Complemental strand, 35939004 - 35938858
Alignment:
Q  166 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaa 265  Q
    |||||||| |||||||| |||||||||||||||||||| || ||||||||||||||||||     ||||||| ||| ||||||||   |||||| |||||    
T  35939004 ggagttccactggctgtgaaaacattaggaagttctctgttttcaaaatttgatttaaat-----aagtgggaatttgtaagagattctgagatatggaa 35938910  T
Q  266 cttagaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
     |||||||| ||| ||  |||||||||||||||| |||||||||||||||||    
T  35938909 tttagaacagaagcaaaatgatattttacctgcactaaaattaagctatgat 35938858  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 36221861 - 36221926
Alignment:
Q  30 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcattt 95  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  36221861 ccttcgtatattttggaaggtctttcgcaagagagctgtttgtatttgtttgtgaaatgggcattt 36221926  T

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Target: chr7; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 35977118 - 35976975
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaactt 268  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||| |||||| || |||  |||||| ||||| ||    
T  35977118 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35977024  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35977023 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35976975  T

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Target: chr7; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 35998530 - 35998387
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaactt 268  Q
    |||||||| ||||| | |||||||||||||||||| |||||||| |||||| |||       ||||||| |||||| || |||  |||||| ||||| ||    
T  35998530 gttccgctagctgtgagaacattaggaagttctctcttctcaaactttgatataagc-----aagtgggaattcgttagggactctgagatgtggaattt 35998436  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    |||||||||||||| || ||||||||||||  |||||||||||||||||    
T  35998435 agaacaaaagaaagatggtattttacctgcgctaaaattaagctatgat 35998387  T

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Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 32727224 - 32727098
Alignment:
Q  186 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 285  Q
    ||||||| |||||||  |||||||||||| ||||||||||     |||||| |||| || |||||   |||||| ||||| |||||||| ||||||| ||    
T  32727224 aacattacgaagttccttattctcaaaatatgatttaaat-----aagtggatatttgtgagagattctgagatatggaatttagaacagaagaaagatg 32727130  T
Q  286 atattttacctgcattaaaattaagctatgat 317  Q
    |||||||||||||||| || ||||||||||||    
T  32727129 atattttacctgcattgaagttaagctatgat 32727098  T

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Target: chr7; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 35946438 - 35946312
Alignment:
Q  186 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 285  Q
    |||||||| ||||||||| |||||||| |||||| ||| |     ||||||| |||||| || |||  |||||| ||||| |||||||||||||||| ||    
T  35946438 aacattagcaagttctctcttctcaaactttgatataagt-----aagtgggaattcgttagggactctgagatgtggaatttagaacaaaagaaagatg 35946344  T
Q  286 atattttacctgcattaaaattaagctatgat 317  Q
    |||| ||||||||  |||||||||| ||||||    
T  35946343 atatcttacctgcgctaaaattaagttatgat 35946312  T

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Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 169 - 317
Target Start/End: Complemental strand, 35952094 - 35951951
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaactt 268  Q
    ||||| |||||||| ||| |||| |||||||| || |||||||| || ||||||| |     ||||||| ||| || ||||||  ||  |||||||| ||    
T  35952094 gttccactggctgtgaaatcattgggaagttccctcttctcaaacttcgatttaagt-----aagtgggaatttgtcagagactctgctatttggaattt 35952000  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatgat 317  Q
    ||||||| |||||| |||||||||||||||  | |||||||||||||||    
T  35951999 agaacaacagaaagatgatattttacctgccctgaaattaagctatgat 35951951  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 35981687 - 35981560
Alignment:
Q  166 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaa 265  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||     ||||||||||||||| ||||| ||   |||| | |||||    
T  35981687 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaa 35981593  T
Q  266 cttagaacaaaagaaaggtgatattttacctgc 298  Q
      |||| || ||||||| |||||||||||||||    
T  35981592 tctagagcagaagaaagatgatattttacctgc 35981560  T

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Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 36003099 - 36002972
Alignment:
Q  166 ggagttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaa 265  Q
    |||||||| || ||||||||||||||||||||||| || || |||||  |||||||     ||||||||||||||| ||||| ||   |||| | |||||    
T  36003099 ggagttccactagctgtcaaaacattaggaagttccctgttttcaaagcttgattt-----aaataagtgggtatttgtaagggattctgagttatggaa 36003005  T
Q  266 cttagaacaaaagaaaggtgatattttacctgc 298  Q
      |||| || ||||||| |||||||||||||||    
T  36003004 tctagagcagaagaaagatgatattttacctgc 36002972  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 36217870 - 36217934
Alignment:
Q  30 ccttcgtatattttggaaggtctttcgcaagagagctatttgtatttgtttgtgaaatgggcatt 94  Q
    ||||||||| |||||||||||||||||  ||||   | ||||| | |||||||||||||||||||    
T  36217870 ccttcgtatgttttggaaggtctttcgttagaggattgtttgtctctgtttgtgaaatgggcatt 36217934  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 317
Target Start/End: Complemental strand, 18117713 - 18117587
Alignment:
Q  186 aacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaacttagaacaaaagaaaggtg 285  Q
    |||||||||||| | ||| || |||||||||||||||||| ||     |||| | | | |||||||  |||||| ||||  |||||||||||| ||  ||    
T  18117713 aacattaggaagctgtctgttttcaaaatttgatttaaataaa-----tgggaacttgcaagagactctgagatgtggactttagaacaaaagcaaaatg 18117619  T
Q  286 atattttacctgcattaaaattaagctatgat 317  Q
    |||||||||||||| |||||||||||||||||    
T  18117618 atattttacctgcactaaaattaagctatgat 18117587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 316
Target Start/End: Complemental strand, 18125383 - 18125241
Alignment:
Q  169 gttccgctggctgtcaaaacattaggaagttctctattctcaaaatttgatttaaattaaataagtgggtattcgtaagagaccatgagatttggaactt 268  Q
    ||||| || ||||| | ||||||||||||||| ||||||||||||||||||||     |||||  ||| |||| ||||||||   |||| | ||||| ||    
T  18125383 gttccactagctgttagaacattaggaagttccctattctcaaaatttgattt-----aaatacatggatatttgtaagagattctgagctgtggaattt 18125289  T
Q  269 agaacaaaagaaaggtgatattttacctgcattaaaattaagctatga 316  Q
    | ||||  | |||| |||||||||||||||| ||||||| ||||||||    
T  18125288 aaaacagcaaaaagatgatattttacctgcactaaaattgagctatga 18125241  T

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