View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20844_high_5 (Length: 310)
Name: NF20844_high_5
Description: NF20844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20844_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 28 - 299
Target Start/End: Complemental strand, 34777171 - 34776900
Alignment:
| Q |
28 |
caatgatctctatgaaaagaacaaatttgggaaattaatttgtaacaggaagtgataaatactattaacttgactctctgaatcgaaaattattaattcg |
127 |
Q |
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| T |
34777171 |
caatgatctctatgaaaagaacaaatttgggaaattaatttgtaacaggaagtgataaatactattaacttgactctctgaatcgaaacttattaattcg |
34777072 |
T |
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| Q |
128 |
gaatttataacattgcagcaacttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcat |
227 |
Q |
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| T |
34777071 |
gaatttataactttgcagcaacttcaggatcaaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcat |
34776972 |
T |
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| Q |
228 |
catatatgagtttttcccattcttgctttgttctttctttaccaagaaacattgtaagcatcaccaaatcat |
299 |
Q |
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| T |
34776971 |
catatatgagtttttcccattcttgctttgttctttctttaccaagaaacattgtaagcatcaccaaatcat |
34776900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 34785206 - 34785066
Alignment:
| Q |
159 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
258 |
Q |
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| T |
34785206 |
aaggataaacttcaacgagagacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
34785107 |
T |
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| Q |
259 |
tctttctttaccaagaaacattgtaagcatcaccaaatcat |
299 |
Q |
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| T |
34785106 |
tctttctttaccaaggaacattgtaagcatcaccaaatcat |
34785066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 267
Target Start/End: Original strand, 11467270 - 11467378
Alignment:
| Q |
159 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
258 |
Q |
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||||||||||||| || || |||||||||||| | || || ||||| |||||||| || ||||||||||||||||||||||| | |||||||| |||| |
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| T |
11467270 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctactgaaacctgcatcatatatgagtttcttccattctttcttttc |
11467369 |
T |
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| Q |
259 |
tctttcttt |
267 |
Q |
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||||||||| |
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| T |
11467370 |
tctttcttt |
11467378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 267
Target Start/End: Complemental strand, 11487927 - 11487821
Alignment:
| Q |
161 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgttc |
260 |
Q |
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||||||||||| |||||||||||||||||| | || || ||||| ||||||||||| || || || ||||| |||||||| | |||||||| |||| || |
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| T |
11487927 |
ggataaacttctatgagtgacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttcttttctc |
11487828 |
T |
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| Q |
261 |
tttcttt |
267 |
Q |
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||||||| |
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| T |
11487827 |
tttcttt |
11487821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 267
Target Start/End: Complemental strand, 11524603 - 11524495
Alignment:
| Q |
159 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattcttgctttgt |
258 |
Q |
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||||||||||||| || || |||||||||||| | || || ||||| ||||||||||| || || || ||||| |||||||| | |||||||| |||| |
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| T |
11524603 |
aaggataaacttctataagagacttgaagccacatattggagtaatcttgtagctgctgaagccagcgtcatagatgagtttcttccattctttcttttc |
11524504 |
T |
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| Q |
259 |
tctttcttt |
267 |
Q |
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||||||||| |
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| T |
11524503 |
tctttcttt |
11524495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 161 - 251
Target Start/End: Complemental strand, 11508386 - 11508296
Alignment:
| Q |
161 |
ggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt |
251 |
Q |
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||||| ||||||||||| |||||||| || | || || ||||| || |||||||| |||||||| || |||||||||| |||||||||| |
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| T |
11508386 |
ggatatacttcgatgagagacttgaaaccgcatataggtgtaatcttatagctgctgaaacctgcgtcgaatatgagtttctcccattctt |
11508296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 251
Target Start/End: Original strand, 11441502 - 11441594
Alignment:
| Q |
159 |
aaggataaacttcgatgagtgacttgaagccagaaatgggggtaattttgtagctgctaaaacctgcatcatatatgagtttttcccattctt |
251 |
Q |
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| T |
11441502 |
aaggataaacttcgatgatagatttgaagccgcatataggtgtaatcttatagctgctgaagcctgcgtcgaatatgagtttctcccattctt |
11441594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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