View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20845_high_4 (Length: 303)
Name: NF20845_high_4
Description: NF20845
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20845_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 30 - 282
Target Start/End: Complemental strand, 37998496 - 37998244
Alignment:
| Q |
30 |
aattactactttggttatagtgcaaaactgcagcgctttgaagttattctacttgatttcttggcttaggaggcactcttttatgaattggatgtaacct |
129 |
Q |
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| T |
37998496 |
aattactactttggttatagtgcaaaactgcagcgctttgaaattattctacttgatttcttggcttaggaggcactcttttatgaattggatgtaacct |
37998397 |
T |
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| Q |
130 |
tgagagggatatagattaattagtagtggttgagttatgaatattgtacataatgtcttgtctcatattgaatgaattggatgtaactttgggatcaatg |
229 |
Q |
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| T |
37998396 |
tgagagggatatagattaattagtagtggttgagttatgaatattgtacataatgtcttgtctcatattgaatgaattggatgtaactttgggatcaatg |
37998297 |
T |
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| Q |
230 |
gttgtaaaagggatttatggctactataatgtaaagtttcatattgatttctt |
282 |
Q |
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| T |
37998296 |
gttgtaaaagggatttatggttactataatgtaaagtttcattttgatttctt |
37998244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 82 - 176
Target Start/End: Complemental strand, 37998253 - 37998158
Alignment:
| Q |
82 |
ttgatttctt-ggcttaggaggcactcttttatgaattggatgtaaccttgagagggatatagattaattagtagtggttgagttatgaatattgt |
176 |
Q |
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| T |
37998253 |
ttgatttctttggcttaggatgcacttttttatgaattggatgtaaccttgatagggatatagattaattagaagtggttgagttatgaatattgt |
37998158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 221 - 264
Target Start/End: Original strand, 18455828 - 18455871
Alignment:
| Q |
221 |
ggatcaatggttgtaaaagggatttatggctactataatgtaaa |
264 |
Q |
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| T |
18455828 |
ggatcaatgtttgtaaaagggatttatgtctactataatgtaaa |
18455871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 274
Target Start/End: Complemental strand, 37998158 - 37998127
Alignment:
| Q |
243 |
tttatggctactataatgtaaagtttcatatt |
274 |
Q |
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| T |
37998158 |
tttatggctactataatgtaaagtttcatatt |
37998127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 15744224 - 15744265
Alignment:
| Q |
221 |
ggatcaatggttgtaaaagggatttatggctactataatgta |
262 |
Q |
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| T |
15744224 |
ggatcaatgcttgtaaaagggatttatgtctactataatgta |
15744265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 221 - 262
Target Start/End: Complemental strand, 1572087 - 1572046
Alignment:
| Q |
221 |
ggatcaatggttgtaaaagggatttatggctactataatgta |
262 |
Q |
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| T |
1572087 |
ggatcaatgcttgtaaaagggatttatgtctactataatgta |
1572046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 52611793 - 52611834
Alignment:
| Q |
223 |
atcaatggttgtaaaagggatttatggctactataatgtaaa |
264 |
Q |
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| T |
52611793 |
atcaatgcttgtaaaagggatttatgtctactataatgtaaa |
52611834 |
T |
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