View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20846_high_1 (Length: 463)
Name: NF20846_high_1
Description: NF20846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20846_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 3 - 302
Target Start/End: Original strand, 13393871 - 13394170
Alignment:
| Q |
3 |
caaaataagaattttatttctaccttgaaagattttggtaaggtaaagaagaaagaggtagttcaagatataaaatttgttgctgctggtggaaaacaaa |
102 |
Q |
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| T |
13393871 |
caaaataagaattttatttctaccttgaaagattttggtaaggtaaagaagaaagaggtagttcaagatataaaatttgttgttgttggtggaaaacaaa |
13393970 |
T |
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| Q |
103 |
atctcactatgaacaaatcaatgttgcaacaacccaatgaacatcagtctaagaacaagaagatatctcatccttggatttgtcattattgtgggagaaa |
202 |
Q |
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| T |
13393971 |
atctcactatgaacaaatcaatgttgcaacaacccaatgaacatcagtctaagaacaagaagatatctcaaccttggatttgtcattattgtgggagaga |
13394070 |
T |
|
| Q |
203 |
gggtcatataagaccattctgcttcaaactgtatggatgtcccaatcaatctaagcataagtcatctaaatcagaagtgagaaatttcaagaaagagtgg |
302 |
Q |
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| T |
13394071 |
gggtcatataagaccattctgcttcaaactgtatggatatcccaatcaatctaagaataagtcatctaaatcagaagtgagaaatgtcaagaaagagtgg |
13394170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 301 - 435
Target Start/End: Original strand, 13394193 - 13394326
Alignment:
| Q |
301 |
ggctaatggtccacacctctcacagaacctcatatagtgaagattggtatcttgacagtggttgttccagacacatgactggagtgaataagttatctaa |
400 |
Q |
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| T |
13394193 |
ggctaatggtccacacctctcacagaacctcatatagtgaagattgatatcttgacaatggttgttccagacacatgactggagtgaat-agttatctaa |
13394291 |
T |
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| Q |
401 |
agatgtaagatcttgtgataacaactatgttacct |
435 |
Q |
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| T |
13394292 |
agatgtaagatcctgtgataacagctatgttacct |
13394326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 133
Target Start/End: Original strand, 7588259 - 7588367
Alignment:
| Q |
25 |
ccttgaaagattttggtaaggtaaagaagaaagaggtagttcaagatataaaatttgttgctgctggtggaaaacaaaatctcactatgaacaaatcaat |
124 |
Q |
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|||||||||||| ||| ||||| ||||||||| ||| || |||| ||||||||||||||| |||||| |||| | | ||| ||| | || |||||||| |
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| T |
7588259 |
ccttgaaagattatggaaaggttaagaagaaaaaggaagctcaaaatataaaatttgttgttgctggaggaacatatgatcccaccacgagtaaatcaat |
7588358 |
T |
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| Q |
125 |
gttgcaaca |
133 |
Q |
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||||||||| |
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| T |
7588359 |
gttgcaaca |
7588367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 6e-35; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 3 - 126
Target Start/End: Original strand, 12387039 - 12387162
Alignment:
| Q |
3 |
caaaataagaattttatttctaccttgaaagattttggtaaggtaaagaagaaagaggtagttcaagatataaaatttgttgctgctggtggaaaacaaa |
102 |
Q |
| |
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||||||| ||||||| || |||||||||||| ||||||||||||||||||||| ||| ||||||||||||||| ||||||| || |||||||| ||||| |
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| T |
12387039 |
caaaatatgaattttggttttaccttgaaagaatttggtaaggtaaagaagaaatagggagttcaagatataaagtttgttgttgttggtggaatacaaa |
12387138 |
T |
|
| Q |
103 |
atctcactatgaacaaatcaatgt |
126 |
Q |
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||| |||||||||||||||||||| |
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| T |
12387139 |
atcccactatgaacaaatcaatgt |
12387162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 304 - 435
Target Start/End: Original strand, 12387237 - 12387368
Alignment:
| Q |
304 |
taatggtccacacctctcacagaacctcatatagtgaagattggtatcttgacagtggttgttccagacacatgactggagtgaataagttatctaaaga |
403 |
Q |
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|||||||| ||| ||||| | || ||||| ||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
12387237 |
taatggtctacatttctcagaaaatctcatctagtgaagactggtattttgacagtggctgttccagacacatgactggagtgaataagttatccaaagt |
12387336 |
T |
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| Q |
404 |
tgtaagatcttgtgataacaactatgttacct |
435 |
Q |
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|||||||| |||||||||| ||||||||||| |
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| T |
12387337 |
tgtaagattgtgtgataacagctatgttacct |
12387368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 12387184 - 12387228
Alignment:
| Q |
208 |
atataagaccattctgcttcaaactgtatggatgtcccaatcaat |
252 |
Q |
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||||||||||||| ||||||||||||||| ||| ||||||||||| |
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| T |
12387184 |
atataagaccattatgcttcaaactgtatagatatcccaatcaat |
12387228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 339 - 385
Target Start/End: Complemental strand, 21528420 - 21528374
Alignment:
| Q |
339 |
gaagattggtatcttgacagtggttgttccagacacatgactggagt |
385 |
Q |
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||||| |||||| |||||||||||||||||||||||||| ||||||| |
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| T |
21528420 |
gaagactggtattttgacagtggttgttccagacacatgtctggagt |
21528374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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