View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20846_high_2 (Length: 428)
Name: NF20846_high_2
Description: NF20846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20846_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 29 - 374
Target Start/End: Original strand, 37219048 - 37219392
Alignment:
| Q |
29 |
agtacattgattataatatcatattcgacattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttg |
128 |
Q |
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| T |
37219048 |
agtacattgattataatatcatactcgacattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttg |
37219147 |
T |
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| Q |
129 |
cgataattttcttgccaacctaggattagaattgaattaataactcaaatagttctttaaaaaacactcatataattatggtatcttaaaggaaatgtaa |
228 |
Q |
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| T |
37219148 |
ggataattttcttgccaacctaggattagaattgaattaataactcaaatagttcttaaaaaaacactcatataattatggtatcttaaaggaaatgtaa |
37219247 |
T |
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| Q |
229 |
ttgatcttgagacttccatataaacttgtttaagaaagaaatgtaactaacaactataaaaatttctcaaacaaaaactataaagattatgccaatttta |
328 |
Q |
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| T |
37219248 |
ttgatcttgagacttccatataaacttgtttaagaaagaaatgtaactaacaactatataaatttctcaaacaaaaactat-aagattatgccaatttta |
37219346 |
T |
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| Q |
329 |
actgtatatgtaaacacttgaattagaagagtaaggatgttttgtc |
374 |
Q |
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| T |
37219347 |
actgtatatgtaaacacttgaattagaagagtaaggatgttttgtc |
37219392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 57 - 128
Target Start/End: Complemental strand, 6412011 - 6411940
Alignment:
| Q |
57 |
cattgtttgtcttatccatattttttattggaatgtctcgttgaagtatatttacagagaagctaactcttg |
128 |
Q |
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| T |
6412011 |
cattctttatcttatccatctttttaattgaaatgtctcgttaaagtatatttacaaggaagttaactcttg |
6411940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 11389569 - 11389627
Alignment:
| Q |
363 |
ggatgttttgtctatccggcttcaggccctgagaggggcgaaggtctgtgtctgtggtg |
421 |
Q |
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| T |
11389569 |
ggatgttttgtctatccggcttcaggccctgagaggggcgaaggtctgtgtctgtggtg |
11389627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 363 - 421
Target Start/End: Original strand, 21738149 - 21738207
Alignment:
| Q |
363 |
ggatgttttgtctatccggcttcaggccctgagaggggcgaaggtctgtgtctgtggtg |
421 |
Q |
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| T |
21738149 |
ggatgttttgactattcggcttcaggccctgagaggggcgaaggtttgtgtctgtggtg |
21738207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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