View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20846_high_5 (Length: 343)
Name: NF20846_high_5
Description: NF20846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20846_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 30 - 332
Target Start/End: Original strand, 36058349 - 36058647
Alignment:
| Q |
30 |
gttactatcatcattcgattttaattccggaaaacatggtgggatgaatgggtgtggttttggaagggggataaaattgatatttcacattcacttgtgc |
129 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36058349 |
gttaccatcatcattcgattttaattccggaaaacatggtgggatgaatgggtgtggttttgtaagggggataaaattgatatttcacattcacttgtgc |
36058448 |
T |
|
| Q |
130 |
catcatcccgttcaaagaatctgacaattagaacttctgagttttctgtttgttcggcgacagatacggtgactcaataacagtccctctctcaccgtcg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36058449 |
catcatcccgttcaaagaatctgacaattagaacttctgagttttctgtttgttcggcgacagatacggtgactcaataacattccctctctcaccgtcg |
36058548 |
T |
|
| Q |
230 |
tcgactcaccgtccgtcgttacactccgacgcaagagcacctcagtcagagaacgcaacgccattgcacttctctttcatttgtaattttcatgcctatt |
329 |
Q |
| |
|
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36058549 |
tcgactca----ccgccgttacactccgacgcaagagcacctcagtcagagaacgcaacgccattgcacttctctttcatttgtaattttcatgcctatt |
36058644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University