View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20846_high_8 (Length: 324)
Name: NF20846_high_8
Description: NF20846
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20846_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 27 - 296
Target Start/End: Original strand, 38462437 - 38462706
Alignment:
| Q |
27 |
tcatgttttgatgtttatttctttttctgtcctatctttttattatggtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtggg |
126 |
Q |
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| T |
38462437 |
tcatgttttgatgtttatttctttttctgtcctatctttttattatggtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtggg |
38462536 |
T |
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| Q |
127 |
ataaaatcatggttatggtattaaatcaaacttagagtttggaatgatgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgt |
226 |
Q |
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| T |
38462537 |
ataaaatcatggttatggtattaaatcaaacttagagtttggaatgatgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgt |
38462636 |
T |
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| Q |
227 |
gtttaattgccacaatttgttatgttttatcaataaatttcgttttattttggtcatataacatgtttat |
296 |
Q |
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| T |
38462637 |
gtttaattgccacaatttgttatgttttatcaatatatttcgttttattttggtcatataacatgtttat |
38462706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 45 - 294
Target Start/End: Complemental strand, 52091519 - 52091272
Alignment:
| Q |
45 |
ttctttttctgtcctatctttttattatggtggctttaagttaaaagttatgtagtaagagtagtaatatgctacgtgtgggataaaatcatggttatgg |
144 |
Q |
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| T |
52091519 |
ttctttttctgtcctatcttcatattatggtggctttaagttaaa-gttatttattaagagtagtaatatgctatgtgcgggataaaatcatgattatgg |
52091421 |
T |
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| Q |
145 |
tattaaatcaaacttagagtttggaatgatgaa----tacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccaca |
240 |
Q |
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| T |
52091420 |
tattaaatcaaact-----tttggaatggtgaataggtaggtaatgagttggaattgtatgctctcctctagtaatgcagtgttgtgtgtcattgacaca |
52091326 |
T |
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| Q |
241 |
atttgttatgttttatcaataaatttcgttttattttggtcatataacatgttt |
294 |
Q |
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| T |
52091325 |
atttgttgtattttatcaacatatttctttttgttttagtcatataacatgttt |
52091272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 48 - 275
Target Start/End: Original strand, 48754162 - 48754385
Alignment:
| Q |
48 |
tttttctgtcctatctttttattatggtggctttaagttaaaagttatgtagtaagagta--gtaatatgctacgtgtgggataaaatcatggttatggt |
145 |
Q |
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| T |
48754162 |
tttttctgtcctatcttcatattatggtggctttaagttaaa-gttatttattaagagtgttgtaatatgctatgtgtgggataaaatcaggactatggt |
48754260 |
T |
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| Q |
146 |
attaaatcaaacttagagtttggaatgatgaatacgtaatgagctagaattctatggtctcctttagtaatgcagggctgtgtttaattgccacaatttg |
245 |
Q |
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| T |
48754261 |
attaaatcaaact-----tttggaatggtgaataggtaatgagttggaattgtatgctctcctttagcaatgcagtgtcgcgtgtcattgccacaatttg |
48754355 |
T |
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| Q |
246 |
ttatgttttatcaataaatttcgttttatt |
275 |
Q |
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| T |
48754356 |
ttgtgttttatcaacatatttctttttatt |
48754385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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