View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20847_high_3 (Length: 570)

Name: NF20847_high_3
Description: NF20847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20847_high_3
NF20847_high_3
[»] chr8 (1 HSPs)
chr8 (532-569)||(36999937-36999974)
[»] chr7 (1 HSPs)
chr7 (502-539)||(6692086-6692123)
[»] chr6 (2 HSPs)
chr6 (502-539)||(796698-796735)
chr6 (502-539)||(8273092-8273129)
[»] chr5 (1 HSPs)
chr5 (502-539)||(19944036-19944073)
[»] chr4 (1 HSPs)
chr4 (517-570)||(20706182-20706234)


Alignment Details
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 532 - 569
Target Start/End: Original strand, 36999937 - 36999974
Alignment:
Q  532 catggagatttggaagaggagatttatatggagcaacc 569  Q
    ||||| || |||||||||||||||||||||||||||||    
T  36999937 catggtgacttggaagaggagatttatatggagcaacc 36999974  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 6692086 - 6692123
Alignment:
Q  502 gagcagttggatgtgaaaactgcatttcttcatggaga 539  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  6692086 gagcagttagatgtgaagactgcatttcttcatggaga 6692123  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Complemental strand, 796735 - 796698
Alignment:
Q  502 gagcagttggatgtgaaaactgcatttcttcatggaga 539  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  796735 gagcagttagatgtgaagactgcatttcttcatggaga 796698  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 8273092 - 8273129
Alignment:
Q  502 gagcagttggatgtgaaaactgcatttcttcatggaga 539  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  8273092 gagcagttagatgtgaagactgcatttcttcatggaga 8273129  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 502 - 539
Target Start/End: Original strand, 19944036 - 19944073
Alignment:
Q  502 gagcagttggatgtgaaaactgcatttcttcatggaga 539  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  19944036 gagcagttagatgtgaagactgcatttcttcatggaga 19944073  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 570
Target Start/End: Original strand, 20706182 - 20706234
Alignment:
Q  517 aaaactgcatttcttcatggagatttggaagaggagatttatatggagcaacca 570  Q
    |||| ||||||||| ||||||||||| ||| |||||| ||||||||||||||||    
T  20706182 aaaaatgcatttctacatggagatttagaaaaggaga-ttatatggagcaacca 20706234  T

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