View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20847_high_5 (Length: 342)

Name: NF20847_high_5
Description: NF20847
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20847_high_5
NF20847_high_5
[»] chr7 (12 HSPs)
chr7 (24-183)||(36221990-36222144)
chr7 (26-183)||(36217999-36218151)
chr7 (26-177)||(35938858-35939004)
chr7 (248-313)||(36221861-36221926)
chr7 (26-183)||(32727098-32727250)
chr7 (26-174)||(35976975-35977118)
chr7 (26-174)||(35998387-35998530)
chr7 (26-174)||(35946312-35946455)
chr7 (26-174)||(35951951-35952094)
chr7 (45-177)||(35981560-35981687)
chr7 (45-177)||(36002972-36003099)
chr7 (249-313)||(36217870-36217934)
[»] chr1 (2 HSPs)
chr1 (27-174)||(18125241-18125383)
chr1 (26-98)||(18117587-18117659)


Alignment Details
Target: chr7 (Bit Score: 128; Significance: 4e-66; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 24 - 183
Target Start/End: Complemental strand, 36222144 - 36221990
Alignment:
Q  24 tcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaa 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||    
T  36222144 tcatcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttat-----ttaa 36222050  T
Q  124 atcaaattttgagaatagagaacttcctaatgttttgacagccagtggaactccagcaca 183  Q
    |||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||    
T  36222049 atcaaattttgataacagagaacttcctaatgttttgacagccagcggaactccagcaca 36221990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 26 - 183
Target Start/End: Complemental strand, 36218151 - 36217999
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaat 125  Q
    |||||||||||||||||| ||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| |||| ||||||     || |||||    
T  36218151 atcatagcttaattttaaagcaggtaaaatatcatctttcttctgttctaaattccatatctcatggtctcttacaaataaccactt-----atctaaat 36218057  T
Q  126 caaattttgagaatagagaacttcctaatgttttgacagccagtggaactccagcaca 183  Q
    ||||||||||||| |||||||||||||  ||| | |||||||| ||||||||||||||    
T  36218056 caaattttgagaacagagaacttcctaccgttctcacagccagcggaactccagcaca 36217999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 26 - 177
Target Start/End: Original strand, 35938858 - 35939004
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaat 125  Q
    ||||||||||||||||| ||||||||||||||||  || ||| |||||||| ||||| ||||||   |||||||| |||  ||||||     ||||||||    
T  35938858 atcatagcttaattttagtgcaggtaaaatatcattttgcttctgttctaaattccatatctcagaatctcttacaaattcccactt-----atttaaat 35938952  T
Q  126 caaattttgagaatagagaacttcctaatgttttgacagccagtggaactcc 177  Q
    |||||||||| || |||||||||||||||||||| |||||||||||||||||    
T  35938953 caaattttgaaaacagagaacttcctaatgttttcacagccagtggaactcc 35939004  T

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Target: chr7; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 248 - 313
Target Start/End: Complemental strand, 36221926 - 36221861
Alignment:
Q  248 aaatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaagg 313  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  36221926 aaatgcccatttcacaaacaaatacaaacagctctcttgcgaaagaccttccaaaatatacgaagg 36221861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 26 - 183
Target Start/End: Original strand, 32727098 - 32727250
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaat 125  Q
    |||||||||||| || |||||||||||||||||| ||||||| |||||||| ||||| ||||||   ||||| || |||||||||||     ||||||||    
T  32727098 atcatagcttaacttcaatgcaggtaaaatatcatctttcttctgttctaaattccatatctcagaatctctcacaaatatccactt-----atttaaat 32727192  T
Q  126 caaattttgagaatagagaacttcctaatgttttgacagccagtggaactccagcaca 183  Q
    || ||||||||||||  ||||||| ||||||| | ||||  |||||||| || |||||    
T  32727193 catattttgagaataaggaacttcgtaatgttctcacagaaagtggaacccctgcaca 32727250  T

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Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 35976975 - 35977118
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaat 125  Q
    |||||||||||||||||  |||||||||||| || |||||||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| ||    
T  35976975 atcatagcttaattttagcgcaggtaaaataccatctttcttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatat 35977069  T
Q  126 caaattttgagaatagagaacttcctaatgttttgacagccagtggaac 174  Q
    |||| |||||||| |||||||||||||||||| | ||||| || |||||    
T  35977070 caaagtttgagaagagagaacttcctaatgttctcacagctagcggaac 35977118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 35998387 - 35998530
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaat 125  Q
    |||||||||||||||||  |||||||||||| || |||||||||||||||| ||||| ||||||  ||| || ||||||  ||||||       ||| ||    
T  35998387 atcatagcttaattttagcgcaggtaaaataccatctttcttttgttctaaattccacatctcagagtccctaacgaattcccactt-----gcttatat 35998481  T
Q  126 caaattttgagaatagagaacttcctaatgttttgacagccagtggaac 174  Q
    |||| |||||||| |||||||||||||||||| | ||||| || |||||    
T  35998482 caaagtttgagaagagagaacttcctaatgttctcacagctagcggaac 35998530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 35946312 - 35946455
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaat 125  Q
    |||||| ||||||||||  |||||||| |||||| |||||||||||||||| ||||| ||||||  ||| || ||||||  ||||||     | ||| ||    
T  35946312 atcataacttaattttagcgcaggtaagatatcatctttcttttgttctaaattccacatctcagagtccctaacgaattcccactt-----acttatat 35946406  T
Q  126 caaattttgagaatagagaacttcctaatgttttgacagccagtggaac 174  Q
    |||| |||||||| ||||||||| |||||||| | || || ||||||||    
T  35946407 caaagtttgagaagagagaacttgctaatgttctcacggctagtggaac 35946455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 174
Target Start/End: Original strand, 35951951 - 35952094
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaat 125  Q
    ||||||||||||||| |  ||||||||||||||| |||||| ||||||||| ||||||||  ||  |||||| || |||  ||||||     | ||||||    
T  35951951 atcatagcttaatttcagggcaggtaaaatatcatctttctgttgttctaaattccaaatagcagagtctctgacaaattcccactt-----acttaaat 35952045  T
Q  126 caaattttgagaatagagaacttcctaatgttttgacagccagtggaac 174  Q
    | || |||||||| || |||||||| |||| ||| ||||||||||||||    
T  35952046 cgaagtttgagaagagggaacttcccaatgatttcacagccagtggaac 35952094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 35981560 - 35981687
Alignment:
Q  45 gcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagaga 144  Q
    ||||||||||||||| ||||||| || ||||  ||||| | ||||   || ||||| |||| ||||||||||     |||||||  ||||| || || ||    
T  35981560 gcaggtaaaatatcatctttcttctgctctagattccataactcagaatcccttacaaatacccacttattt-----aaatcaagctttgaaaacaggga 35981654  T
Q  145 acttcctaatgttttgacagccagtggaactcc 177  Q
    ||||||||||||||||||||| |||||||||||    
T  35981655 acttcctaatgttttgacagctagtggaactcc 35981687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 45 - 177
Target Start/End: Original strand, 36002972 - 36003099
Alignment:
Q  45 gcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatcaaattttgagaatagaga 144  Q
    ||||||||||||||| ||||||| || ||||  ||||| | ||||   || ||||| |||| ||||||||||     |||||||  ||||| || || ||    
T  36002972 gcaggtaaaatatcatctttcttctgctctagattccataactcagaatcccttacaaatacccacttattt-----aaatcaagctttgaaaacaggga 36003066  T
Q  145 acttcctaatgttttgacagccagtggaactcc 177  Q
    ||||||||||||||||||||| |||||||||||    
T  36003067 acttcctaatgttttgacagctagtggaactcc 36003099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 313
Target Start/End: Complemental strand, 36217934 - 36217870
Alignment:
Q  249 aatgcccatttcacaaacaaatacaaatagctctcttgcgaaagaccttccaaaatatacgaagg 313  Q
    ||||||||||||||||||| | ||||| |   ||||  ||||||||||||||||| |||||||||    
T  36217934 aatgcccatttcacaaacagagacaaacaatcctctaacgaaagaccttccaaaacatacgaagg 36217870  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 27 - 174
Target Start/End: Original strand, 18125241 - 18125383
Alignment:
Q  27 tcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctcttacgaatatccacttatttaatttaaatc 126  Q
    |||||||| ||||||| |||||||||||||||| |||| |  |||| ||| ||||| | ||||   |||||||| ||||||||     |  |||||||||    
T  18125241 tcatagctcaattttagtgcaggtaaaatatcatctttttgctgttttaaattccacagctcagaatctcttacaaatatcca-----tgtatttaaatc 18125335  T
Q  127 aaattttgagaatagagaacttcctaatgttttgacagccagtggaac 174  Q
    ||||||||||||||| ||||||||||||||| | ||||| ||||||||    
T  18125336 aaattttgagaatagggaacttcctaatgttctaacagctagtggaac 18125383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 26 - 98
Target Start/End: Original strand, 18117587 - 18117659
Alignment:
Q  26 atcatagcttaattttaatgcaggtaaaatatcacctttcttttgttctaagttccaaatctcatggtctctt 98  Q
    ||||||||||||||||| ||||||||||||||||  || ||||||||||||  |||| ||||||  |||||||    
T  18117587 atcatagcttaattttagtgcaggtaaaatatcattttgcttttgttctaaagtccacatctcagagtctctt 18117659  T

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