View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20848_high_1 (Length: 379)
Name: NF20848_high_1
Description: NF20848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20848_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 10 - 298
Target Start/End: Original strand, 9963362 - 9963650
Alignment:
| Q |
10 |
agcagagttttaatcctatgaagcacaatatacatttcttcaagacaaagaacataagaattttgacgagttgaattcgaagatgaaactgaattacgaa |
109 |
Q |
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| T |
9963362 |
agcagagttttaaccctatgaagcacaatatacatttcttcaagacaaagaacataagaattttgacgagttgaattcgaagatgaaactgaattgcgaa |
9963461 |
T |
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| Q |
110 |
ttaggtcatcgaaaacgacaccgaggaggtgcgttttacgtatagtggaagaagaaattttgtttaaaaggaaacgacaccatggagctgcgtttaagga |
209 |
Q |
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| T |
9963462 |
ttaggtcatcgaaaacgacaccgagaaggtgcgttttacgtatagtggaagaagaaattttgtttaaaaggaaacgacaccatggagctgcgtttaagga |
9963561 |
T |
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| Q |
210 |
acatatttggtttgtgaggtgtaaaagagaatggaggaggttaaagttagtgatatttggggtaataaacgacgacgtttctgatgatg |
298 |
Q |
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| T |
9963562 |
acatatttggtttgtgaggtgtaaaagagaatggaggaggttaaagttagtgatatttggggtaataaacgacgacgtttctgatgatg |
9963650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 9963673 - 9963710
Alignment:
| Q |
320 |
ttgaggtgatattgccatattttttggtaattgatgat |
357 |
Q |
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| T |
9963673 |
ttgaggtgatattgccatattttttggtaattgatgat |
9963710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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