View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20848_high_12 (Length: 309)
Name: NF20848_high_12
Description: NF20848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20848_high_12 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 6e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 135 - 280
Target Start/End: Original strand, 44034372 - 44034517
Alignment:
| Q |
135 |
caggttaagggaatccatttatggcacaactttaaggtttattctttttcagatgtttattctcctatatgtgtaaacaatccattctggtataaataca |
234 |
Q |
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| T |
44034372 |
caggttaagggaatccatttatggcacaactttaaggtttattctttttcagatgtttattctcctatatgtgtaaacaatccattctggtataaataca |
44034471 |
T |
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| Q |
235 |
catcctctaatctcaaatttctacaaaccaaatcaaactcacttaa |
280 |
Q |
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| T |
44034472 |
catcctctaatctcaaatttctacaaaccaaatcaaactcacttaa |
44034517 |
T |
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Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 137
Target Start/End: Complemental strand, 4284670 - 4284576
Alignment:
| Q |
38 |
tttcaacaataagaaggtgtattagcnnnnnnncaaaacaaagagtgtactaatagcactactcccaataacaagtttctttacaatttcgcgggcacag |
137 |
Q |
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| T |
4284670 |
tttcaacaataagaaggtgtattagcaaa-----aaaaaaaagagtgtactaatagcactactccaaataacaagtttcttcacaatttcgcgggcacag |
4284576 |
T |
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