View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20848_high_7 (Length: 327)
Name: NF20848_high_7
Description: NF20848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20848_high_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 31733396 - 31733101
Alignment:
| Q |
12 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtnnnnnnn |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31733396 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctgaacacatagcataagatcctaccaatttcacagcatagttcagtcaaaaaa |
31733297 |
T |
|
| Q |
112 |
nnnctcaaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaata |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
31733296 |
aaactccaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacaaataaaaactccaaata |
31733197 |
T |
|
| Q |
212 |
agcaaaaccacagagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgatgatgt |
307 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
31733196 |
agcaaaaccacacagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgaagatgt |
31733101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 124 - 294
Target Start/End: Complemental strand, 31735962 - 31735793
Alignment:
| Q |
124 |
acaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaataagcaaaaccaca |
223 |
Q |
| |
|
||||| ||||||||| |||||||||| ||||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
31735962 |
acaccacaaaaacttgatgaaactccaattcaggatcacaacatatagtcatacaaaggtcaaatgccacaactaaaaactccaaataagcaaaacaaca |
31735863 |
T |
|
| Q |
224 |
gagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacac-ttgtagtgtcacgttttt |
294 |
Q |
| |
|
|| |||||||||||||||||||| |||||||||| ||| |||||||| || ||| ||||||| |||||| |
|
|
| T |
31735862 |
cag--gagtacaaaacaaaaggaatgagtagaataaaaacaattgcctcagacgttgcagtgtcatgttttt |
31735793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 31736065 - 31736020
Alignment:
| Q |
12 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggat |
57 |
Q |
| |
|
||||||||||| | ||||||| ||||||||||||||||| |||||| |
|
|
| T |
31736065 |
cataggcaggaccaagaagggatcacaatatcacaaatcacgggat |
31736020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 12 - 307
Target Start/End: Complemental strand, 6498387 - 6498092
Alignment:
| Q |
12 |
cataggcaggatcgagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtnnnnnnn |
111 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6498387 |
cataggcaggatcaagaaggggtcacaatatcacaaatcgcgggatctaaacacatagcataagatcctaccaatttcacagcatagttcagtaaaaaaa |
6498288 |
T |
|
| Q |
112 |
nnnctcaaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacatataaaaactccaaata |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
6498287 |
aaactccaactcacaccccaaaaacttcatgaaactcctattcaggatcataacatatcgtcatacaaaggtcaaatgccacaaataaaaactccaaata |
6498188 |
T |
|
| Q |
212 |
agcaaaaccacagagcacagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgatgatgt |
307 |
Q |
| |
|
|||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6498187 |
agcaaaacaacacagcagagtacaaaacaaaaggaatgggtagaataaatacagttgcctcacacttgtagtgtcacgtttttaatatgaagatgt |
6498092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University