View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20848_high_9 (Length: 322)

Name: NF20848_high_9
Description: NF20848
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20848_high_9
NF20848_high_9
[»] scaffold0542 (1 HSPs)
scaffold0542 (12-299)||(883-1170)
[»] chr1 (18 HSPs)
chr1 (31-297)||(25232211-25232476)
chr1 (54-130)||(19497447-19497525)
chr1 (54-130)||(38690922-38691000)
chr1 (54-130)||(46976809-46976887)
chr1 (54-138)||(5079938-5080024)
chr1 (54-138)||(12648551-12648637)
chr1 (54-138)||(29354660-29354746)
chr1 (54-131)||(50115745-50115824)
chr1 (54-138)||(3991608-3991694)
chr1 (54-138)||(13631419-13631505)
chr1 (54-138)||(20351459-20351545)
chr1 (52-128)||(32105653-32105731)
chr1 (54-130)||(36074781-36074859)
chr1 (54-138)||(38774086-38774172)
chr1 (54-138)||(44467585-44467671)
chr1 (54-138)||(51664258-51664344)
chr1 (67-130)||(13175794-13175859)
chr1 (256-294)||(46977013-46977051)
[»] chr2 (26 HSPs)
chr2 (121-294)||(25615222-25615395)
chr2 (54-207)||(17996093-17996248)
chr2 (15-190)||(24684035-24684211)
chr2 (12-191)||(25855274-25855456)
chr2 (55-124)||(25618075-25618146)
chr2 (220-297)||(27731078-27731155)
chr2 (54-138)||(3797773-3797859)
chr2 (54-138)||(7264983-7265069)
chr2 (54-130)||(11691813-11691891)
chr2 (54-130)||(12906475-12906553)
chr2 (54-130)||(24604072-24604150)
chr2 (54-130)||(24940633-24940711)
chr2 (54-138)||(27274332-27274418)
chr2 (54-130)||(34919765-34919843)
chr2 (55-223)||(45477359-45477529)
chr2 (54-138)||(211413-211499)
chr2 (54-138)||(5349170-5349256)
chr2 (54-138)||(10622426-10622512)
chr2 (54-138)||(24751662-24751748)
chr2 (54-130)||(28347380-28347458)
chr2 (54-138)||(38947766-38947852)
chr2 (54-130)||(41006959-41007037)
chr2 (54-138)||(41562015-41562101)
chr2 (256-294)||(11691649-11691687)
chr2 (54-103)||(437320-437371)
chr2 (54-103)||(39795973-39796024)
[»] chr6 (8 HSPs)
chr6 (47-214)||(254307-254476)
chr6 (38-188)||(34110626-34110778)
chr6 (54-138)||(1610723-1610809)
chr6 (54-130)||(18607989-18608067)
chr6 (54-130)||(21357333-21357411)
chr6 (54-130)||(23961315-23961393)
chr6 (54-138)||(28358321-28358407)
chr6 (54-103)||(31148322-31148373)
[»] chr5 (10 HSPs)
chr5 (86-188)||(37898862-37898964)
chr5 (52-223)||(20288269-20288440)
chr5 (54-138)||(7019938-7020024)
chr5 (54-138)||(27865817-27865903)
chr5 (54-130)||(4198886-4198964)
chr5 (54-138)||(13566079-13566165)
chr5 (54-138)||(38858162-38858248)
chr5 (55-138)||(37818849-37818934)
chr5 (54-103)||(11031459-11031510)
chr5 (110-190)||(12338643-12338723)
[»] chr7 (13 HSPs)
chr7 (15-168)||(3762891-3763045)
chr7 (54-130)||(10707661-10707739)
chr7 (111-214)||(23197617-23197720)
chr7 (113-214)||(23196192-23196293)
chr7 (54-138)||(616721-616807)
chr7 (54-138)||(15067892-15067978)
chr7 (54-138)||(18107391-18107477)
chr7 (54-138)||(42501410-42501496)
chr7 (79-138)||(43826617-43826676)
chr7 (67-130)||(12113536-12113601)
chr7 (54-138)||(30788542-30788628)
chr7 (54-138)||(43622107-43622193)
chr7 (54-138)||(45765382-45765468)
[»] chr8 (10 HSPs)
chr8 (54-130)||(7169880-7169958)
chr8 (54-130)||(22582157-22582235)
chr8 (54-130)||(22586019-22586098)
chr8 (54-138)||(35964721-35964807)
chr8 (54-138)||(7342082-7342168)
chr8 (54-138)||(8421828-8421914)
chr8 (54-138)||(30303582-30303668)
chr8 (54-138)||(32376880-32376966)
chr8 (54-138)||(32430837-32430923)
chr8 (54-130)||(43683220-43683298)
[»] chr4 (11 HSPs)
chr4 (12-175)||(13896687-13896852)
chr4 (54-130)||(38462820-38462898)
chr4 (54-138)||(3405793-3405879)
chr4 (54-130)||(4977941-4978019)
chr4 (54-138)||(9891875-9891961)
chr4 (54-138)||(19071629-19071715)
chr4 (79-130)||(51642987-51643038)
chr4 (54-130)||(11503427-11503506)
chr4 (149-190)||(20970437-20970478)
chr4 (258-294)||(17238653-17238689)
chr4 (69-138)||(17238803-17238874)
[»] scaffold0341 (1 HSPs)
scaffold0341 (54-138)||(15329-15415)
[»] chr3 (15 HSPs)
chr3 (54-138)||(14400560-14400646)
chr3 (54-130)||(29949984-29950062)
chr3 (54-130)||(29999138-29999216)
chr3 (54-138)||(46991220-46991306)
chr3 (84-137)||(25055896-25055949)
chr3 (54-130)||(77003-77081)
chr3 (54-138)||(3950746-3950832)
chr3 (54-138)||(6742890-6742976)
chr3 (54-138)||(8158955-8159041)
chr3 (54-138)||(13745693-13745779)
chr3 (54-138)||(16446623-16446709)
chr3 (54-138)||(30945614-30945700)
chr3 (54-138)||(36815488-36815574)
chr3 (12-105)||(21543446-21543540)
chr3 (54-132)||(48248847-48248927)
[»] scaffold0494 (1 HSPs)
scaffold0494 (54-138)||(2884-2970)
[»] scaffold0101 (1 HSPs)
scaffold0101 (54-138)||(34812-34898)


Alignment Details
Target: scaffold0542 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: scaffold0542
Description:

Target: scaffold0542; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 12 - 299
Target Start/End: Complemental strand, 1170 - 883
Alignment:
Q  12 cagagttgaaggggcttttggtagagtgaagaataatttaagcaatagtgtggacgatttgggtactttgggagaaaatacatgatatgttggtgatcca 111  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  1170 cagagttgaaggggcttttggtagagtgaagaataatttaagtaatagtgtggatgatttgggtactttgggagaaaatacatgatatgttggtgatcca 1071  T
Q  112 gttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatct 211  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||    
T  1070 gttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacgtcattttgtactctaggttagggggttatgtatct 971  T
Q  212 agacgtgctttgaactttattgttgtgaaataacattgttccaaggaaacattgtgcatggacaaggaaagttgcggttgtgtgatga 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  970 agacgtgctttgaactttattgttgtgaaataacattgttccaaggaaacattgtgcatggacaaggaaagctgtggttgtgtgatga 883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 123; Significance: 4e-63; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 31 - 297
Target Start/End: Original strand, 25232211 - 25232476
Alignment:
Q  31 ggtagagtgaagaataatttaagcaatagtgtggacgatttgggtactttgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||| |||||||||  |||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25232211 ggtatagtgaagaaatatttgagcaatagtgtggatgatttgggtactt-gggagaaaatacatgatatgttggtgatctagttaactgagatacaaaca 25232309  T
Q  131 tcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatctagacgtgctttgaacttta 230  Q
    ||||||||||||||||| |||||||||||||||| || ||||||| |||||||||||| |  ||  | ||||||||| ||||||  |||| ||  |   |    
T  25232310 tcatttgggaggagttgtactgtattagaacatatattcaaagacgtcattttgtactttgggtcggtgggttatgtgtctagatatgctctgggcaaca 25232409  T
Q  231 ttgttgtgaaataacattgttccaaggaaacattgtgcatggacaaggaaagttgcggttgtgtgat 297  Q
    |||||||| || ||||   || |||||||||||||||||||||||||| |||||||  |||||||||    
T  25232410 ttgttgtggaagaacaacattgcaaggaaacattgtgcatggacaagggaagttgcaattgtgtgat 25232476  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 19497525 - 19497447
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  19497525 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaaca 19497447  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 38691000 - 38690922
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  38691000 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaaca 38690922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 46976809 - 46976887
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  46976809 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaaca 46976887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 5079938 - 5080024
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  5079938 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 5080024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 12648637 - 12648551
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  12648637 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 12648551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 29354746 - 29354660
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  29354746 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 29354660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 131
Target Start/End: Complemental strand, 50115824 - 50115745
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacat 131  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||    
T  50115824 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacat 50115745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 3991608 - 3991694
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  3991608 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 3991694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 13631419 - 13631505
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  ||||||||||| |||||    
T  13631419 caatagtgtgggtgatttgggtacttgctgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcctttgg 13631505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 20351459 - 20351545
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  20351459 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttcaccgctatacaaacatcctttgg 20351545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 32105731 - 32105653
Alignment:
Q  52 agcaatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaa 128  Q
    ||||||| |||||  |||||||||||||  || |||||||||||||||||||| |||||| |||||  || ||||||||    
T  32105731 agcaataatgtgggtgatttgggtacttgctgagagaaaatacatgatatgtttgtgatctagttagatgcgatacaaa 32105653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 36074859 - 36074781
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  |||||||||||| |||| ||||||||| | || || |||| ||||||||||    
T  36074859 caatagtgtgggtgatttgggtacttgttgggagaaaataaatgacatgttggtgcttcaattcactgcgatacaaaca 36074781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 38774172 - 38774086
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  38774172 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 38774086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 44467585 - 44467671
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  44467585 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 44467671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 51664258 - 51664344
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  |||||||||||| |||| |||||| || | ||||| | || |||||||||| |||||||    
T  51664258 caatagtgtgggtgatttgggtacttgttgggagaaaatatatgacatgttgttgcttcagttcattgcgatacaaacaacatttgg 51664344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 13175794 - 13175859
Alignment:
Q  67 gatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||| ||||||    
T  13175794 gatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgcgatgcaaaca 13175859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 46977013 - 46977051
Alignment:
Q  256 ggaaacattgtgcatggacaaggaaagttgcggttgtgt 294  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  46977013 ggaaacattgtgcatggacaaggaaatttgtggttgtgt 46977051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 121 - 294
Target Start/End: Complemental strand, 25615395 - 25615222
Alignment:
Q  121 gatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatctagacgtgct 220  Q
    ||||||||||||||||||||||||||| |||||||| ||| |||||| ||||||| ||| ||| |||| |  ||| ||||||||||| ||||||  ||||    
T  25615395 gatacaaacatcatttgggaggagttgtactgtattggaatatagattcaaagacgtcactttttactatgggttggggggttatgtgtctagatatgct 25615296  T
Q  221 ttgaactttattgttgtgaaataacattgttccaaggaaacattgtgcatggacaaggaaagttgcggttgtgt 294  Q
    |||  |   |||||| || || | || |||| || |||||||||||| ||||||||||||||||||||||||||    
T  25615295 ttgggcaacattgttttggaagagcaatgttgcagggaaacattgtgtatggacaaggaaagttgcggttgtgt 25615222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 54 - 207
Target Start/End: Complemental strand, 17996248 - 17996093
Alignment:
Q  54 caatagtgtggacgatttgggtacttt--gggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgggaggagttgcact 151  Q
    ||||| |||||  ||||||||||||||  |||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||   ||||   |      
T  17996248 caataatgtgggtgatttgggtactttttgggagaaaatacatgatatgttggtgattcaattaactgcgatacaaacatcatttggtcagagtgttatc 17996149  T
Q  152 gtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgt 207  Q
    ||||| |||||||||| ||||||  ||| ||||||||||  ||||||| |||||||    
T  17996148 gtattggaacatagattcaaagatgtcactttgtactcttggttagggtgttatgt 17996093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 190
Target Start/End: Original strand, 24684035 - 24684211
Alignment:
Q  15 agttgaaggggcttttggtagagtgaagaataatttaagcaatagtgtggacgatttgggtact-ttgggagaaaatacatgatatgttggtgatccagt 113  Q
    |||||||||||||  ||||| | |||||||  |||| |||||||||||||| |||||  ||| | || ||| ||||||||||| |||||||| ||||| |    
T  24684035 agttgaaggggctcatggtaaattgaagaaatatttgagcaatagtgtggatgatttaagtattgttaggataaaatacatgagatgttggtaatccaat 24684134  T
Q  114 taactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactct 190  Q
    |||  ||||||||| |||||||||| | |||||| ||||| || ||||| |||| |||||||| | |||| ||||||    
T  24684135 taatggagatacaatcatcatttggtatgagttgtactgtcttggaacaaagatccaaagacaacgttttatactct 24684211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 12 - 191
Target Start/End: Complemental strand, 25855456 - 25855274
Alignment:
Q  12 cagagttgaaggggcttttggtagagtgaagaataatttaagcaatagtgtggacgatttgggtactt--tgggagaaaa-tacatgatatgttggtgat 108  Q
    |||||||||||||| |  ||  |||||||||||  |||| |||  ||| ||||  |||||||||||||  ||||| | || ||||||| |||||||| ||    
T  25855456 cagagttgaaggggatcatgacagagtgaagaaatatttgagcgctagagtgggtgatttgggtacttgttgggaaataagtacatgagatgttggtaat 25855357  T
Q  109 ccagttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactcta 191  Q
    |||||||   ||||||||||||||||||||  ||||||| ||||  || |||||||||||||||||||||| ||| |||||||    
T  25855356 ccagttatgggagatacaaacatcatttggttggagttgtactgccttggaacatagatacaaagacatcaatttatactcta 25855274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 55 - 124
Target Start/End: Complemental strand, 25618146 - 25618075
Alignment:
Q  55 aatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagata 124  Q
    ||||||||||  ||| |||||||||  |||||||||||||||||||||||||||||| ||||||||| ||||    
T  25618146 aatagtgtgggtgatctgggtacttgttgggagaaaatacatgatatgttggtgatcaagttaactgcgata 25618075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 27731078 - 27731155
Alignment:
Q  220 tttgaactttattgttgtgaaataacattgttccaaggaaacattgtgcatggacaaggaaagttgcggttgtgtgat 297  Q
    ||||| |||||||||||||||| ||||  |||| | ||||||||||||| |||||||||||||||  | |||||||||    
T  27731078 tttgagctttattgttgtgaaagaacaacgttctagggaaacattgtgcgtggacaaggaaagttatgattgtgtgat 27731155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 3797859 - 3797773
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  3797859 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 3797773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 7264983 - 7265069
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  7264983 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 7265069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 11691891 - 11691813
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| |||| ||||||||||    
T  11691891 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgcgatacaaaca 11691813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 12906553 - 12906475
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||  ||||||||| | ||||| |||| ||||||||||    
T  12906553 caatagtgtgggtgatttgggtacttgttgggagaaaatacatggcatgttggtgcttcagttcactgcgatacaaaca 12906475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 24604150 - 24604072
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| |||| ||||||||||    
T  24604150 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgcgatacaaaca 24604072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 24940711 - 24940633
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| |||| ||||||||||    
T  24940711 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgcgatacaaaca 24940633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 27274418 - 27274332
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  27274418 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 27274332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 34919843 - 34919765
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||  ||||||||||    
T  34919843 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgtttcagttcactacgatacaaaca 34919765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 45477359 - 45477529
Alignment:
Q  55 aatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgggaggagttgcactg 152  Q
    ||||||||||  |||||||||||||  | ||||||||||||||| ||||||||| | ||||| |||| |||||||||| | |||||   |||    ||      
T  45477359 aatagtgtgggtgatttgggtacttgtttggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaacaacctttggtcagagcgttacct 45477458  T
Q  153 tattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatctagacgtgctttg 223  Q
    | || |||||||||| |||||| |||||||||||||| |  ||||| ||| |||| ||||||  |||||||    
T  45477459 tgttggaacatagattcaaagatatcattttgtactccagcttaggtggtcatgtgtctagatatgctttg 45477529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 211499 - 211413
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  211499 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttcaccgctatacaaacatcctttgg 211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 5349170 - 5349256
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  5349170 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 5349256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 10622512 - 10622426
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  10622512 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 10622426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 24751662 - 24751748
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| |||   ||||||||||| |||||    
T  24751662 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactactatacaaacatcctttgg 24751748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 28347458 - 28347380
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  |||||||||||||||||  ||||| || | ||||| |||| ||||||||||    
T  28347458 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacttgttgttgcttcagttcactgcgatacaaaca 28347380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 38947766 - 38947852
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  38947766 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttcaccgctatacaaacatcctttgg 38947852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 41007037 - 41006959
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  |||||||||||| |||| |||||| || | ||||| |||| ||||||||||    
T  41007037 caatagtgtgggtgatttgggtacttgttgggagaaaatagatgacatgttgttgcttcagttcactgcgatacaaaca 41006959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 41562015 - 41562101
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  41562015 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 41562101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 294
Target Start/End: Complemental strand, 11691687 - 11691649
Alignment:
Q  256 ggaaacattgtgcatggacaaggaaagttgcggttgtgt 294  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  11691687 ggaaacattgtgcatggacaaggaaatttgtggttgtgt 11691649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 437320 - 437371
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttg 103  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||    
T  437320 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttg 437371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 39795973 - 39796024
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttg 103  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||    
T  39795973 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttg 39796024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 47 - 214
Target Start/End: Complemental strand, 254476 - 254307
Alignment:
Q  47 atttaagcaatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgggaggag 144  Q
    |||| |||||||||||||  |||||||||||||  ||||||||||||||||| ||||||||||| |||||||||  |||||||||||||||||    |||    
T  254476 atttgagcaatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgattcagttaactacgatacaaacatcatttgatcagag 254377  T
Q  145 ttgcactgtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatctaga 214  Q
    || |||  |||| |||||||||| |||| || ||| |||||||| |   |||||||||||||| ||||||    
T  254376 ttacaccatattggaacatagattcaaatacgtcactttgtactatggattagggggttatgtgtctaga 254307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 34110778 - 34110626
Alignment:
Q  38 tgaagaataatttaagcaatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatt 135  Q
    |||||||  |||| |||||||||||||| ||||||| |||||  ||||||||||||||||||| |||| | |||||||||||||  ||  |  |||||||    
T  34110778 tgaagaaatatttgagcaatagtgtggatgatttggatacttgttgggagaaaatacatgatacgttgttaatccagttaactggaatttaggcatcatt 34110679  T
Q  136 tgggaggagttgcactgtattagaacatagatacaaagacatcattttgtact 188  Q
    ||   ||||||| ||| | ||  |||||||||||||||| | |||||||||||    
T  34110678 tgattggagttgtactctcttgaaacatagatacaaagaaaacattttgtact 34110626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 1610809 - 1610723
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  1610809 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 1610723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 18607989 - 18608067
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||| | |||| ||||||||||    
T  18607989 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagatcactgcgatacaaaca 18608067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 21357411 - 21357333
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    ||||| |||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| | || ||||||||||    
T  21357411 caataatgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcaatgcgatacaaaca 21357333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 23961393 - 23961315
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    ||||| |||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| | || ||||||||||    
T  23961393 caataatgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcaatgcgatacaaaca 23961315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 28358321 - 28358407
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||| ||||||| |||||    
T  28358321 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatataaacatcctttgg 28358407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 31148322 - 31148373
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttg 103  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||    
T  31148322 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttg 31148373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 5e-25; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 86 - 188
Target Start/End: Complemental strand, 37898964 - 37898862
Alignment:
Q  86 aaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgt 185  Q
    ||||||||||| |||||||| ||||||||| |||| |||||| |||||||||| |||||||| || || || |||||||||||||||||||||||||| |    
T  37898964 aaaatacatgagatgttggtaatccagttatctgaaatacaatcatcatttggtaggagttgtacggtcttggaacatagatacaaagacatcattttat 37898865  T
Q  186 act 188  Q
    |||    
T  37898864 act 37898862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 52 - 223
Target Start/End: Original strand, 20288269 - 20288440
Alignment:
Q  52 agcaatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgggaggagttgca 149  Q
    |||||||||||||  |||||||||||||  ||||||||||||| ||||||| ||||||| |||||||||| ||||||||||||||||||   |||||| |    
T  20288269 agcaatagtgtgggtgatttgggtacttgttgggagaaaatacttgatatgctggtgatgcagttaactgtgatacaaacatcatttggtcagagttgta 20288368  T
Q  150 ctgtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatctagacgtgctttg 223  Q
    | ||||| ||| ||  || ||||||  ||| ||| ||||||  ||||||||||||| | ||||||  |||||||    
T  20288369 ccgtattggaagat--attcaaagatgtcactttttactcttggttagggggttatatgtctagatatgctttg 20288440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 7020024 - 7019938
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  7020024 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 7019938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 27865903 - 27865817
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  27865903 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 27865817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 4198964 - 4198886
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  || |||||||||||||| |||||| || | ||||| |||| ||||||||||    
T  4198964 caatagtgtgggtgatttgggtacttgttgagagaaaatacatgacatgttgttgcttcagttcactgcgatacaaaca 4198886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 13566165 - 13566079
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  |||||||||||| |||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  13566165 caatagtgtgggtgatttgggtacttgttgggagaaaatatatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 13566079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 38858248 - 38858162
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  ||||||||||| |||||    
T  38858248 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcctttgg 38858162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 138
Target Start/End: Complemental strand, 37818934 - 37818849
Alignment:
Q  55 aatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    ||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| |||   ||||||||||| |||||    
T  37818934 aatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttcactactatacaaacatcctttgg 37818849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 103
Target Start/End: Complemental strand, 11031510 - 11031459
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttg 103  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||    
T  11031510 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttg 11031459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 190
Target Start/End: Complemental strand, 12338723 - 12338643
Alignment:
Q  110 cagttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactct 190  Q
    ||||| |||||||||||  |||| |||||||||||||  | ||| || |||||||||||||  |||| | |||||||||||    
T  12338723 cagttgactgagatacatgcatcctttgggaggagttctattgtcttggaacatagatacacggacaacgttttgtactct 12338643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 3762891 - 3763045
Alignment:
Q  15 agttgaaggggcttttggtagagtgaagaataatttaagcaatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccag 112  Q
    ||||| |||||||  ||||||  |||||||  |||| |||| ||||||||| || |||| |||||  ||||| ||||||||| | |||||||| ||||||    
T  3762891 agttgtaggggctcatggtaggttgaagaaatatttgagcactagtgtggatgacttgg-tacttgttgggataaaatacataagatgttggtaatccag 3762989  T
Q  113 ttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagata 168  Q
    ||||||| ||||||  |||||||| | |||||||| ||| | || |||||||||||    
T  3762990 ttaactgggatacattcatcatttagtaggagttgtactatcttggaacatagata 3763045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 10707739 - 10707661
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  10707739 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaaca 10707661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 111 - 214
Target Start/End: Complemental strand, 23197720 - 23197617
Alignment:
Q  111 agttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatc 210  Q
    ||||||||||||||  |  ||| |||||||||||||| | ||| |||||| ||||||||||||||| ||| ||||||| || ||| | ||||||||| ||    
T  23197720 agttaactgagataagagaatcctttgggaggagttgtattgtcttagaaaatagatacaaagacaacatattgtactataagttggagggttatgtttc 23197621  T
Q  211 taga 214  Q
    ||||    
T  23197620 taga 23197617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 23196293 - 23196192
Alignment:
Q  113 ttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagacatcattttgtactctatgttagggggttatgtatcta 212  Q
    ||||||||||||||| |||| || ||||||||||| | |||  ||||||||| ||||||||||| ||| ||||||| |  ||| | ||||||||| ||||    
T  23196293 ttaactgagatacaagcatccttcgggaggagttgtattgtcatagaacatatatacaaagacaacatattgtactatgagttggagggttatgtttcta 23196194  T
Q  213 ga 214  Q
    ||    
T  23196193 ga 23196192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 616807 - 616721
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| |||||||| || ||||||| || |  ||||||||||| |||||    
T  616807 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcatatgttgttgctccagttcaccgctatacaaacatcctttgg 616721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 15067892 - 15067978
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||| |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  ||||||||||| |||||    
T  15067892 caatagtgtggatgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcctttgg 15067978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 18107391 - 18107477
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  18107391 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 18107477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 42501410 - 42501496
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  |||||||||||||||||    
T  42501410 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcatttgg 42501496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 43826676 - 43826617
Alignment:
Q  79 ttgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||||||||| ||||||||| | ||||| |||| |||||||||| |||||||    
T  43826676 ttgggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaacaacatttgg 43826617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 12113601 - 12113536
Alignment:
Q  67 gatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  12113601 gatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgtgatacaaaca 12113536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 30788542 - 30788628
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  30788542 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 30788628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 43622193 - 43622107
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  43622193 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 43622107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 45765382 - 45765468
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  45765382 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 45765468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 7169880 - 7169958
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  7169880 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaaca 7169958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 22582157 - 22582235
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  22582157 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgtgatacaaaca 22582235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 22586019 - 22586098
Alignment:
Q  54 caatagtgtggacgatttgggtactttg---ggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||||   ||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  22586019 caatagtgtgggtgatttgggtactttgttgggagaaaatacatgacatgttggtgcttcagttcactgtgatacaaaca 22586098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 35964807 - 35964721
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  |||||||||| ||||||    
T  35964807 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacattatttgg 35964721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 7342082 - 7342168
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  7342082 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 7342168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 8421914 - 8421828
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  8421914 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttcaccgctatacaaacatcctttgg 8421828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 30303668 - 30303582
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  30303668 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 30303582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 32376966 - 32376880
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  32376966 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 32376880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 32430923 - 32430837
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  32430923 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 32430837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 43683298 - 43683220
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| |||  ||||||||||    
T  43683298 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactacgatacaaaca 43683220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 12 - 175
Target Start/End: Complemental strand, 13896852 - 13896687
Alignment:
Q  12 cagagttgaaggggcttttggtagagtgaagaataatttaagcaatagtgtggacgatttgggtacttt--gggagaaaatacatgatatgttggtgatc 109  Q
    ||||||||||||||||   | ||||||||||||  |||| |||| ||| || || ||||| |||| ||   |||| | ||||||||| ||| | || |||    
T  13896852 cagagttgaaggggctcacgctagagtgaagaaatatttgagcactagagtagatgatttaggtatttgtcgggaaataatacatgagatggtagtaatc 13896753  T
Q  110 cagttaactgagatacaaacatcatttgggaggagttgcactgtattagaacatagatacaaagac 175  Q
     |||||   |||||||||| ||||||||| |||||||| ||||| || ||||||||||||||||||    
T  13896752 tagttaggagagatacaaatatcatttggtaggagttgtactgtcttggaacatagatacaaagac 13896687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 38462898 - 38462820
Alignment:
Q  54 caatagtgtggacgatttgggtacttt--gggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  ||||||||||||||  |||||||||||||||| |||||| || | ||||| |||| ||||||||||    
T  38462898 caatagtgtgggtgatttgggtactttttgggagaaaatacatgacatgttgttgcttcagttcactgcgatacaaaca 38462820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 3405793 - 3405879
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| |||   ||||||||||| |||||    
T  3405793 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcacttctatacaaacatcctttgg 3405879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 4978019 - 4977941
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    ||||||||||   |||||||||||||  ||||||||||||||||| |||||| || | ||||| |||| ||||||||||    
T  4978019 caatagtgtgagtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgcgatacaaaca 4977941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 9891875 - 9891961
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  ||||||||||| |||||    
T  9891875 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcctttgg 9891961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 19071715 - 19071629
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  19071715 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 19071629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 130
Target Start/End: Complemental strand, 51643038 - 51642987
Alignment:
Q  79 ttgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||||||||| ||||||||| | ||||| |||| ||||||||||    
T  51643038 ttgggagaaaatacatgacatgttggtgcttcagttcactgcgatacaaaca 51642987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 11503427 - 11503506
Alignment:
Q  54 caatagtgtggacgatttgggtactt---tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||||||||   ||||||||||||||||| ||| || || | ||||| |||| ||||||||||    
T  11503427 caatagtgtgggtgatttgggtacttgtttgggagaaaatacatgacatgctgttgcttcagttcactgcgatacaaaca 11503506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Complemental strand, 20970478 - 20970437
Alignment:
Q  149 actgtattagaacatagatacaaagacatcattttgtactct 190  Q
    |||||||| |||||||||||||||||  ||||||||||||||    
T  20970478 actgtattggaacatagatacaaagatgtcattttgtactct 20970437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 17238689 - 17238653
Alignment:
Q  258 aaacattgtgcatggacaaggaaagttgcggttgtgt 294  Q
    |||||||||||||||||||||||| || |||||||||    
T  17238689 aaacattgtgcatggacaaggaaattttcggttgtgt 17238653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 69 - 138
Target Start/End: Complemental strand, 17238874 - 17238803
Alignment:
Q  69 tttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||| |||| ||||||||| | ||||| ||||  ||||||||| |||||||    
T  17238874 tttgggtacttgttgggagaaaataaatgacatgttggtgcttcagttcactgcaatacaaacaacatttgg 17238803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 15415 - 15329
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  15415 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 15329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 14400560 - 14400646
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  14400560 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 14400646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 29949984 - 29950062
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||| ||||  ||||||||||||||||| |||||| || | ||||| |||||||||||||||    
T  29949984 caatagtgtgggtgatttgggcacttgttgggagaaaatacatgacatgttgttgcttcagttcactgagatacaaaca 29950062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 29999138 - 29999216
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||||||  |||||||| ||||  ||||||||||||||||| |||||| || | ||||| |||||||||||||||    
T  29999138 caatagtgtgggtgatttgggcacttgttgggagaaaatacatgacatgttgttgcttcagttcactgagatacaaaca 29999216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 46991306 - 46991220
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| ||||  ||||||||||| |||||    
T  46991306 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatcctttgg 46991220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 137
Target Start/End: Complemental strand, 25055949 - 25055896
Alignment:
Q  84 agaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttg 137  Q
    ||||||||||||| |||||||| |||||||||   |||||||||||||||||||    
T  25055949 agaaaatacatgagatgttggtaatccagttagtggagatacaaacatcatttg 25055896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 77081 - 77003
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaaca 130  Q
    |||||||| ||  |||||||||||||  ||||||||||||||||| ||||||||| | ||||| ||||  |||||||||    
T  77081 caatagtgcgggtgatttgggtacttgttgggagaaaatacatgacatgttggtgcttcagttcactgcaatacaaaca 77003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 3950746 - 3950832
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  3950746 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 3950832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 6742890 - 6742976
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  6742890 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttcaccgctatacaaacatcctttgg 6742976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 8159041 - 8158955
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  8159041 caatagtgtgggtgatttgggtacttgttgggagaaaatacataacatgttgttgctccagttgaccgctatacaaacatcctttgg 8158955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 13745779 - 13745693
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  ||||||||||| |||||    
T  13745779 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcctttgg 13745693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 16446623 - 16446709
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  ||||||||||| |||||    
T  16446623 caatagtgtgggtgatttgggtacttgctgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcctttgg 16446709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 30945700 - 30945614
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  30945700 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 30945614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Complemental strand, 36815574 - 36815488
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||||| |||||| || | ||||| || |  ||||||||||| |||||    
T  36815574 caatagtgtgggtgatttgggtacttgttgggagaaaatacatgacatgttgttgcttcagttcaccgctatacaaacatcctttgg 36815488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 21543446 - 21543540
Alignment:
Q  12 cagagttgaaggggcttttggtagagtgaagaataatttaagcaatagtgtggacgatttgggtact-ttgggagaaaatacatgatatgttggt 105  Q
    ||||||||||| || |  ||||| | |||||||  |||| |||||||||||||  |||||| ||  | |||||||||||||||||||||||||||    
T  21543446 cagagttgaagaggatcatggtaaattgaagaaagatttgagcaatagtgtgggtgatttgagtcatgttgggagaaaatacatgatatgttggt 21543540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 48248927 - 48248847
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatc 132  Q
    |||||||||||  ||||||| |||||  ||||||||||||||||| |||||| || | ||||| ||||  |||||||||||    
T  48248927 caatagtgtgggtgatttggatacttgttgggagaaaatacatgacatgttgttgcttcagttcactgctatacaaacatc 48248847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0494 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 2884 - 2970
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  2884 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 2970  T

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Target: scaffold0101 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 54 - 138
Target Start/End: Original strand, 34812 - 34898
Alignment:
Q  54 caatagtgtggacgatttgggtactt--tgggagaaaatacatgatatgttggtgatccagttaactgagatacaaacatcatttgg 138  Q
    |||||||||||  |||||||||||||  ||||||||||||||| | |||||| || ||||||| || |  ||||||||||| |||||    
T  34812 caatagtgtgggtgatttgggtacttgttgggagaaaatacatcacatgttgttgctccagttgaccgctatacaaacatcctttgg 34898  T

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