View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20849_high_17 (Length: 301)

Name: NF20849_high_17
Description: NF20849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20849_high_17
NF20849_high_17
[»] chr4 (22 HSPs)
chr4 (12-224)||(36583917-36584131)
chr4 (222-260)||(36583860-36583898)
chr4 (20-65)||(36196603-36196648)
chr4 (22-74)||(33997611-33997663)
chr4 (108-165)||(7712971-7713028)
chr4 (25-57)||(10128579-10128611)
chr4 (42-92)||(50080843-50080893)
chr4 (108-162)||(53354108-53354162)
chr4 (43-84)||(7456555-7456596)
chr4 (23-76)||(12214443-12214496)
chr4 (22-59)||(25921132-25921169)
chr4 (31-68)||(28703936-28703973)
chr4 (108-169)||(38004419-38004480)
chr4 (25-82)||(46342946-46343003)
chr4 (42-74)||(13273237-13273269)
chr4 (41-85)||(21954991-21955035)
chr4 (23-59)||(22160507-22160543)
chr4 (23-59)||(23316056-23316092)
chr4 (23-59)||(31106439-31106475)
chr4 (23-59)||(36825430-36825466)
chr4 (42-70)||(52741793-52741821)
chr4 (117-169)||(56084797-56084849)
[»] chr8 (28 HSPs)
chr8 (43-169)||(13206050-13206179)
chr8 (20-91)||(18887304-18887376)
chr8 (25-169)||(14988173-14988321)
chr8 (106-169)||(2442260-2442323)
chr8 (108-169)||(15920078-15920138)
chr8 (25-74)||(29005658-29005707)
chr8 (30-74)||(2292995-2293039)
chr8 (42-74)||(14538110-14538142)
chr8 (42-88)||(35134314-35134361)
chr8 (23-57)||(20285600-20285634)
chr8 (23-57)||(21072229-21072263)
chr8 (30-59)||(3675052-3675081)
chr8 (139-168)||(6235476-6235505)
chr8 (125-166)||(11912045-11912086)
chr8 (108-169)||(30567801-30567862)
chr8 (23-59)||(415328-415364)
chr8 (23-59)||(1658059-1658095)
chr8 (20-68)||(2442555-2442603)
chr8 (30-74)||(5934639-5934683)
chr8 (34-66)||(6227930-6227962)
chr8 (23-59)||(6336006-6336042)
chr8 (23-59)||(14031637-14031673)
chr8 (117-169)||(14987731-14987783)
chr8 (30-66)||(15147691-15147727)
chr8 (25-57)||(15871477-15871509)
chr8 (23-59)||(36802027-36802063)
chr8 (23-59)||(37402082-37402118)
chr8 (102-165)||(40155001-40155065)
[»] chr5 (33 HSPs)
chr5 (37-154)||(19840364-19840485)
chr5 (25-91)||(14725393-14725460)
chr5 (108-166)||(17822172-17822230)
chr5 (95-165)||(35373300-35373370)
chr5 (30-79)||(42422369-42422418)
chr5 (108-169)||(42522710-42522771)
chr5 (30-74)||(3955752-3955796)
chr5 (109-169)||(27175185-27175245)
chr5 (32-74)||(13877167-13877209)
chr5 (30-68)||(39938050-39938088)
chr5 (32-73)||(13873276-13873317)
chr5 (30-74)||(32008167-32008211)
chr5 (21-91)||(964239-964310)
chr5 (120-155)||(13877090-13877125)
chr5 (122-169)||(14725294-14725341)
chr5 (122-169)||(17716189-17716236)
chr5 (25-64)||(39935380-39935419)
chr5 (120-154)||(13873199-13873233)
chr5 (30-68)||(16273042-16273080)
chr5 (23-65)||(27021299-27021341)
chr5 (111-169)||(39178126-39178184)
chr5 (95-169)||(39850416-39850490)
chr5 (108-169)||(9666176-9666237)
chr5 (21-54)||(32870080-32870113)
chr5 (124-169)||(39585063-39585108)
chr5 (96-161)||(39860231-39860296)
chr5 (41-88)||(8515535-8515583)
chr5 (22-54)||(17064614-17064646)
chr5 (129-169)||(17704322-17704362)
chr5 (23-59)||(27263709-27263745)
chr5 (23-59)||(31172169-31172205)
chr5 (23-59)||(41879675-41879711)
chr5 (25-57)||(43370338-43370370)
[»] chr3 (25 HSPs)
chr3 (25-169)||(35258786-35258925)
chr3 (95-165)||(36637173-36637243)
chr3 (108-169)||(17583225-17583286)
chr3 (108-169)||(49428592-49428653)
chr3 (97-165)||(44941351-44941419)
chr3 (41-84)||(33886509-33886552)
chr3 (117-166)||(35368337-35368386)
chr3 (20-88)||(36640450-36640519)
chr3 (21-93)||(7639963-7640038)
chr3 (23-59)||(25440838-25440874)
chr3 (25-91)||(42522045-42522110)
chr3 (41-91)||(32758219-32758270)
chr3 (122-165)||(45871145-45871188)
chr3 (103-169)||(26513006-26513072)
chr3 (30-68)||(47415877-47415915)
chr3 (22-59)||(3806817-3806854)
chr3 (25-74)||(21970185-21970234)
chr3 (25-74)||(21992621-21992670)
chr3 (108-169)||(39948902-39948963)
chr3 (23-59)||(21301651-21301687)
chr3 (23-59)||(25441361-25441397)
chr3 (23-59)||(33706513-33706549)
chr3 (23-59)||(37980446-37980482)
chr3 (23-59)||(44176891-44176927)
chr3 (23-59)||(44183573-44183609)
[»] chr1 (24 HSPs)
chr1 (31-145)||(11463911-11464028)
chr1 (108-168)||(44717354-44717414)
chr1 (20-91)||(7614056-7614127)
chr1 (102-165)||(52675327-52675390)
chr1 (31-65)||(31970632-31970666)
chr1 (25-74)||(4353612-4353661)
chr1 (22-59)||(18314166-18314203)
chr1 (25-74)||(40368152-40368201)
chr1 (23-59)||(10164172-10164208)
chr1 (109-169)||(11067085-11067145)
chr1 (36-68)||(16676685-16676717)
chr1 (122-165)||(10428263-10428306)
chr1 (108-167)||(38340123-38340182)
chr1 (23-65)||(21968025-21968067)
chr1 (42-84)||(26542775-26542817)
chr1 (108-169)||(4968691-4968752)
chr1 (9-58)||(8659303-8659352)
chr1 (108-169)||(33129429-33129490)
chr1 (23-59)||(8028561-8028597)
chr1 (25-57)||(10390509-10390541)
chr1 (32-68)||(13512403-13512439)
chr1 (42-74)||(25788821-25788853)
chr1 (106-166)||(26542684-26542744)
chr1 (22-54)||(40808628-40808660)
[»] chr6 (7 HSPs)
chr6 (39-164)||(7980521-7980649)
chr6 (102-166)||(8478986-8479050)
chr6 (122-169)||(22793691-22793738)
chr6 (20-91)||(13502734-13502806)
chr6 (23-59)||(13846692-13846728)
chr6 (30-68)||(4577916-4577954)
chr6 (23-59)||(31383579-31383615)
[»] chr2 (22 HSPs)
chr2 (25-167)||(41554752-41554898)
chr2 (95-169)||(23914592-23914666)
chr2 (108-162)||(40303016-40303070)
chr2 (21-74)||(32908800-32908853)
chr2 (30-74)||(32630612-32630656)
chr2 (126-169)||(10886564-10886607)
chr2 (42-92)||(11259457-11259507)
chr2 (41-169)||(23914791-23914923)
chr2 (25-74)||(27058714-27058763)
chr2 (20-68)||(19317634-19317682)
chr2 (20-72)||(38525898-38525950)
chr2 (25-76)||(15508732-15508783)
chr2 (122-165)||(27649229-27649272)
chr2 (103-165)||(9740593-9740655)
chr2 (108-166)||(34983779-34983837)
chr2 (105-166)||(12599539-12599600)
chr2 (41-74)||(21392018-21392051)
chr2 (20-65)||(32217023-32217068)
chr2 (23-59)||(2383240-2383276)
chr2 (23-59)||(34196351-34196387)
chr2 (23-59)||(36213921-36213957)
chr2 (23-59)||(40324253-40324289)
[»] chr7 (32 HSPs)
chr7 (32-165)||(6099647-6099783)
chr7 (30-80)||(45279970-45280020)
chr7 (108-169)||(13640942-13641003)
chr7 (34-161)||(20561228-20561358)
chr7 (108-169)||(40358490-40358551)
chr7 (22-65)||(47081459-47081502)
chr7 (24-74)||(5357474-5357524)
chr7 (23-65)||(44549226-44549268)
chr7 (20-65)||(22702614-22702659)
chr7 (117-169)||(29285586-29285638)
chr7 (25-84)||(5801273-5801332)
chr7 (42-91)||(2998498-2998548)
chr7 (108-166)||(13703326-13703384)
chr7 (34-68)||(14774345-14774379)
chr7 (34-68)||(15224798-15224832)
chr7 (21-59)||(17264036-17264074)
chr7 (95-165)||(17771567-17771637)
chr7 (42-84)||(28737221-28737263)
chr7 (34-68)||(32675737-32675771)
chr7 (21-59)||(40356746-40356784)
chr7 (122-167)||(2475434-2475479)
chr7 (25-74)||(13640237-13640286)
chr7 (23-80)||(16847793-16847850)
chr7 (108-169)||(35079591-35079652)
chr7 (23-91)||(35365064-35365133)
chr7 (112-169)||(38237480-38237537)
chr7 (109-169)||(40659437-40659498)
chr7 (23-59)||(5096391-5096427)
chr7 (129-169)||(14625120-14625160)
chr7 (23-59)||(24052528-24052564)
chr7 (21-65)||(37037174-37037218)
chr7 (25-57)||(38174978-38175010)
[»] scaffold1017 (1 HSPs)
scaffold1017 (111-169)||(2038-2096)
[»] scaffold0025 (1 HSPs)
scaffold0025 (108-169)||(11685-11746)
[»] scaffold0018 (1 HSPs)
scaffold0018 (112-165)||(36811-36864)
[»] scaffold0003 (1 HSPs)
scaffold0003 (108-169)||(226387-226448)
[»] scaffold0035 (1 HSPs)
scaffold0035 (23-59)||(81976-82012)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 12 - 224
Target Start/End: Complemental strand, 36584131 - 36583917
Alignment:
Q  12 attatactcaatattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgttattttaaatagtaaca--ttagtttatgttttacca 109  Q
    |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  36584131 attataatcaatattttgtatgaaattttaattttgattaaaatgatatgtatagatgtttgttattttaaatagtaacaaattagtttatgttttacca 36584032  T
Q  110 ataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacatagtgatgatgaacaactgcatcagccacaacagcagcaag 209  Q
    |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36584031 ataatacaacagatataataaaaaatttcatctttttcaataacatcaataatataacatagtgatgatgaacaactgcatcagccacaacagcagcaag 36583932  T
Q  210 atcaagtcaagttga 224  Q
    |||||||||||||||    
T  36583931 atcaagtcaagttga 36583917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 260
Target Start/End: Complemental strand, 36583898 - 36583860
Alignment:
Q  222 tgatgagtaacctagtaatgatgaacgacccagtgatga 260  Q
    |||||||||||||||||||||||||||||||||||||||    
T  36583898 tgatgagtaacctagtaatgatgaacgacccagtgatga 36583860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 36196648 - 36196603
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||||    
T  36196648 caatattttatatgaaattttgattttgattaaaattatatgtata 36196603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 22 - 74
Target Start/End: Original strand, 33997611 - 33997663
Alignment:
Q  22 atattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||||| ||||||||||||||||||||||||||||||  ||||||| |||||    
T  33997611 atattttatatgaaattttaattttgattaaaattatacatatagatatttgt 33997663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 165
Target Start/End: Complemental strand, 7713028 - 7712971
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||||| |||| |||||||||||||  | |||||||| ||||||||||||||||||    
T  7713028 caataatataacaaatataataaaaatcattatcttttttaataacatcaacaatata 7712971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 10128611 - 10128579
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaatta 57  Q
    |||||||||||||||||||||||||||||||||    
T  10128611 ttttgtatgaaattttaattttgattaaaatta 10128579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 92
Target Start/End: Original strand, 50080843 - 50080893
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgttattttaaatagtaacat 92  Q
    ||||||||||||||||||||||| || |||||| |||| |||| |||||||    
T  50080843 attttgattaaaattatatgtatggacgtttgtgatttcaaattgtaacat 50080893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 53354108 - 53354162
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaat 162  Q
    |||| ||| |||| |||||| ||||||||| |||||||| |||||||||||||||    
T  53354108 caattatataacaaatataacaaaaattcttatcttttttaataacatcaacaat 53354162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 7456555 - 7456596
Alignment:
Q  43 ttttgattaaaattatatgtatagatgtttgttattttaaat 84  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  7456555 ttttgtttaaaattatatgtatagatgtttgtgatttcaaat 7456596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 12214443 - 12214496
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta 76  Q
    |||||| ||||||||||| |||||||||||||||| |  |||| ||||||||||    
T  12214443 tattttttatgaaattttgattttgattaaaattaaaaatataaatgtttgtta 12214496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 25921169 - 25921132
Alignment:
Q  22 atattttgtatgaaattttaattttgattaaaattata 59  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  25921169 atattttatatgaaattttgattttgattaaaattata 25921132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 68
Target Start/End: Original strand, 28703936 - 28703973
Alignment:
Q  31 atgaaattttaattttgattaaaattatatgtatagat 68  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  28703936 atgaaattttgattttgattaaaaatatatgtatagat 28703973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 38004480 - 38004419
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| || | || ||| ||||||||| |||||||| ||||||| ||||||||||||||    
T  38004480 caataatataataaatttaacaaaaattcttatcttttttaataacaacaacaatataacat 38004419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 46343003 - 46342946
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgttattttaa 82  Q
    |||| ||||||||||| ||||||||||||| || |  |||| ||||||||||||||||    
T  46343003 ttttttatgaaattttgattttgattaaaagtaaaaatataaatgtttgttattttaa 46342946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Original strand, 13273237 - 13273269
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgt 74  Q
    |||||||||||||||||||| ||||||||||||    
T  13273237 attttgattaaaattatatgcatagatgtttgt 13273269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 85
Target Start/End: Original strand, 21954991 - 21955035
Alignment:
Q  41 aattttgattaaaattatatgtatagatgtttgttattttaaata 85  Q
    ||||||||||||||||| ||||||| ||||||||| ||| |||||    
T  21954991 aattttgattaaaattaaatgtataaatgtttgttctttaaaata 21955035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 22160543 - 22160507
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  22160543 tattttatatgaaattttgattttgattaaaattata 22160507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 23316092 - 23316056
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  23316092 tattttatatgaaattttgattttgattaaaattata 23316056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 31106439 - 31106475
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  31106439 tattttatatgaaattttgattttgattaaaattata 31106475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 36825466 - 36825430
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  36825466 tattttatatgaaattttgattttgattaaaattata 36825430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 52741821 - 52741793
Alignment:
Q  42 attttgattaaaattatatgtatagatgt 70  Q
    |||||||||||||||||||||||||||||    
T  52741821 attttgattaaaattatatgtatagatgt 52741793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 56084797 - 56084849
Alignment:
Q  117 aacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||| |||||||| |||||||  ||||||| ||||||| ||||||||||||||    
T  56084797 aacaaatataatacaaattcttttcttttttaataacaccaacaatataacat 56084849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 169
Target Start/End: Original strand, 13206050 - 13206179
Alignment:
Q  43 ttttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaacatta--gtttatgttttaccaataatacaacagatataataaaaattctca 139  Q
    |||||||||||||||||||||||||||||||| | |||||||||||||||     |||||| |||||| ||||||| |||| ||||| |||||||||| |    
T  13206050 ttttgattaaaattatatgtatagatgtttgtgacttttaaatagtaacaaccatgtttattttttacaaataatataacaaatatattaaaaattctta 13206149  T
Q  140 tctttttcaataacatcaacaatataacat 169  Q
    ||||||||| ||||| ||||||||||||||    
T  13206150 tctttttcattaacaccaacaatataacat 13206179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 18887304 - 18887376
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    |||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  18887304 caattttttttatgaaattttgattttgattaaaattatatgtatagatgtttgtgacttttaaatagtaaca 18887376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 25 - 169
Target Start/End: Complemental strand, 14988321 - 14988173
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca----ttagtttatgttttaccaataatacaac 119  Q
    |||| ||| ||||||| ||||||||||||||||||| ||||||||||||| | || ||||||||||||    |  |||||| ||| |||||||||| ||     
T  14988321 ttttttataaaattttgattttgattaaaattatatatatagatgtttgtgacttataaatagtaacaaaactatgtttatctttaaccaataata-aaa 14988223  T
Q  120 agatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    | ||||||||||||  || ||||||||| | |||| ||||||||||||||    
T  14988222 aaatataataaaaacacttatctttttcgaaaacaccaacaatataacat 14988173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 2442323 - 2442260
Alignment:
Q  106 accaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||||| |||| |||||||| ||||| | |||||||| ||||||||||||||||||||||    
T  2442323 accaataatataacaaatataatataaatttttatcttttttaataacatcaacaatataacat 2442260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 15920138 - 15920078
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  15920138 caataatataacaaatataataaaaattcttatcttttt-aataacaccaacaatataacat 15920078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 29005707 - 29005658
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||| ||||||||||  |||| ||||||||||||||||||||||||||||    
T  29005707 ttttttatgaaatttagatttcgattaaaattatatgtatagatgtttgt 29005658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 2293039 - 2292995
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||||||||  |||||||||||||||||||||||| ||||||||    
T  2293039 tatgaaatttagattttgattaaaattatatgtataaatgtttgt 2292995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 14538142 - 14538110
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgt 74  Q
    |||||||||||||||||||||||||||||||||    
T  14538142 attttgattaaaattatatgtatagatgtttgt 14538110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 42 - 88
Target Start/End: Complemental strand, 35134361 - 35134314
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgtta-ttttaaatagta 88  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||||||    
T  35134361 attttgattaaaattaaatgtatagttgtttgttacttttaaatagta 35134314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 20285600 - 20285634
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaatta 57  Q
    |||||| ||||||||||||||||||||||||||||    
T  20285600 tattttttatgaaattttaattttgattaaaatta 20285634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 21072229 - 21072263
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaatta 57  Q
    |||||| ||||||||||||||||||||||||||||    
T  21072229 tattttttatgaaattttaattttgattaaaatta 21072263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 30 - 59
Target Start/End: Original strand, 3675052 - 3675081
Alignment:
Q  30 tatgaaattttaattttgattaaaattata 59  Q
    ||||||||||||||||||||||||||||||    
T  3675052 tatgaaattttaattttgattaaaattata 3675081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Original strand, 6235476 - 6235505
Alignment:
Q  139 atctttttcaataacatcaacaatataaca 168  Q
    ||||||||||||||||||||||||||||||    
T  6235476 atctttttcaataacatcaacaatataaca 6235505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 166
Target Start/End: Complemental strand, 11912086 - 11912045
Alignment:
Q  125 taataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    ||||| ||||||| |||||||| |||||||||||||||||||    
T  11912086 taatataaattcttatcttttttaataacatcaacaatataa 11912045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 30567801 - 30567862
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||  |||| |||||||| ||||| | |||||||| ||||| ||||||||||||||||    
T  30567801 caataatttaacaaatataatataaattattatcttttttaataatatcaacaatataacat 30567862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 415364 - 415328
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  415364 tattttatatgaaattttgattttgattaaaattata 415328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 1658095 - 1658059
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  1658095 tattttatatgaaattttgattttgattaaaattata 1658059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 2442603 - 2442555
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtatagat 68  Q
    ||||||||| |||||||||| ||||||||||| ||||||| | ||||||    
T  2442603 caatattttatatgaaatttcaattttgattagaattataagcatagat 2442555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 5934639 - 5934683
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||||||||| |||||||||||||||||| ||||| || |||||    
T  5934639 tatgaaattttgattttgattaaaattataagtataaatatttgt 5934683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 6227930 - 6227962
Alignment:
Q  34 aaattttaattttgattaaaattatatgtatag 66  Q
    ||||||||||||||||||||||||||| |||||    
T  6227930 aaattttaattttgattaaaattatatatatag 6227962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 6336042 - 6336006
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  6336042 tattttatatgaaattttgattttgattaaaattata 6336006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 14031637 - 14031673
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  14031637 tattttatatgaaattttgattttgattaaaattata 14031673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 14987783 - 14987731
Alignment:
Q  117 aacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||| |||||||||||||||| |||||||||||||| | ||| || |||||||    
T  14987783 aacaaatataataaaaattcttatctttttcaataataccaataaaataacat 14987731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 15147691 - 15147727
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatag 66  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  15147691 tatgaaattttgattttgattaaaattataagtatag 15147727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 15871477 - 15871509
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaatta 57  Q
    |||| ||||||||||||||||||||||||||||    
T  15871477 ttttttatgaaattttaattttgattaaaatta 15871509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 36802063 - 36802027
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  36802063 tattttatatgaaattttgattttgattaaaattata 36802027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 37402082 - 37402118
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  37402082 tattttatatgaaattttgattttgattaaaattata 37402118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 165
Target Start/End: Original strand, 40155001 - 40155065
Alignment:
Q  102 ttttaccaataatacaacagatataataaaaattctcatctttt-tcaataacatcaacaatata 165  Q
    |||||| ||||||| |||| ||||  |||||||||| ||||||| ||||||||| ||||||||||    
T  40155001 ttttacgaataatataacaaatatcttaaaaattcttatcttttttcaataacaacaacaatata 40155065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 2e-27; HSPs: 33)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 19840485 - 19840364
Alignment:
Q  37 ttttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaac--atta-gtttatgttttaccaataatacaacagatataataaaa 132  Q
    |||||||||||||||||||||||||||||||||||||| | ||||||||||||||  |||| |||||| ||||| |||||||| || | |||||||||||    
T  19840485 ttttaattttgattaaaattatatgtatagatgtttgtgacttttaaatagtaacagattatgtttatcttttatcaataatataataaatataataaaa 19840386  T
Q  133 attctcatctttttcaataaca 154  Q
    ||||| |||||||| |||||||    
T  19840385 attcttatcttttttaataaca 19840364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 14725460 - 14725393
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||||||| | |||||||| ||||||    
T  14725460 ttttttatgaaatttgaattttggttaaaattatatgtatagatgtttgtgacttttaaatggtaaca 14725393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 166
Target Start/End: Original strand, 17822172 - 17822230
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    |||||||| |||| |||||| ||||||||| |||||||||||||||| |||||||||||    
T  17822172 caataatataacaaatataacaaaaattcttatctttttcaataacaccaacaatataa 17822230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 35373370 - 35373300
Alignment:
Q  95 gtttatgttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||| ||||||||| |||| |||| |||||||||||||||| ||||||||| |||||| ||| ||||||    
T  35373370 gtttatcttttaccaacaatataacaaatataataaaaattcttatctttttctataacaccaataatata 35373300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 42422418 - 42422369
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagatgtttgttattt 79  Q
    ||||||||||  ||||||||||||||||||||||||||||||||| ||||    
T  42422418 tatgaaatttagattttgattaaaattatatgtatagatgtttgtgattt 42422369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 42522710 - 42522771
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||||||||||||||| || ||||| ||||||| ||||||||||||||    
T  42522710 caataatataacaaatataataaaaattcttatattttttaataacaccaacaatataacat 42522771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 3955752 - 3955796
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  3955752 tatgaaatttatattttgattaaaattatatgtatagatgtttgt 3955796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 27175245 - 27175185
Alignment:
Q  109 aataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||||| |||| |||||| ||||||||| |||||||| ||||||| ||||||||||||||    
T  27175245 aataatataacaaatataacaaaaattcttatcttttttaataacaccaacaatataacat 27175185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 74
Target Start/End: Complemental strand, 13877209 - 13877167
Alignment:
Q  32 tgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||||||||||||||||||| ||||||||||||||| |||||    
T  13877209 tgaaattttaattttgattaatattatatgtatagatatttgt 13877167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 68
Target Start/End: Complemental strand, 39938088 - 39938050
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagat 68  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  39938088 tatgaaattttgattttgattaaaattatatgtatagat 39938050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 73
Target Start/End: Complemental strand, 13873317 - 13873276
Alignment:
Q  32 tgaaattttaattttgattaaaattatatgtatagatgtttg 73  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  13873317 tgaaattttaattttgattaatattatatgtatagatatttg 13873276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 74
Target Start/End: Complemental strand, 32008211 - 32008167
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||||||||| |||||||||||||||||||||||| || |||||    
T  32008211 tatgaaattttgattttgattaaaattatatgtataaatttttgt 32008167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 964239 - 964310
Alignment:
Q  21 aatattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    ||||| || ||| |||||||| ||||||||||||||||| ||||| |||||||| | ||||||| |||||||    
T  964239 aatatcttttattaaattttatttttgattaaaattataggtataaatgtttgtgacttttaaaaagtaaca 964310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 13877125 - 13877090
Alignment:
Q  120 agatataataaaaattctcatctttttcaataacat 155  Q
    |||||||||||||||||| |||||||||||||||||    
T  13877125 agatataataaaaattcttatctttttcaataacat 13877090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 14725341 - 14725294
Alignment:
Q  122 atataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||||||||||| || ||||||||||||| || |||||||||||    
T  14725341 atataataaaaattcttatatttttcaataacaccagcaatataacat 14725294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 169
Target Start/End: Complemental strand, 17716236 - 17716189
Alignment:
Q  122 atataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||||||||||||||||||||||| ||| ||||| ||| ||||||||    
T  17716236 atataataaaaattctcatctttttaaatgacatcgacagtataacat 17716189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 39935380 - 39935419
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtat 64  Q
    |||| |||||||||||||||||| ||||||||||||||||    
T  39935380 ttttttatgaaattttaattttggttaaaattatatgtat 39935419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 154
Target Start/End: Complemental strand, 13873233 - 13873199
Alignment:
Q  120 agatataataaaaattctcatctttttcaataaca 154  Q
    |||||||||||||||||| ||||||||||||||||    
T  13873233 agatataataaaaattcttatctttttcaataaca 13873199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 16273042 - 16273080
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagat 68  Q
    ||||||||||| |||||||||||||||||||| ||||||    
T  16273042 tatgaaattttgattttgattaaaattatatgcatagat 16273080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 27021299 - 27021341
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    |||||| ||||||||||| |||||||||||||||||| |||||    
T  27021299 tattttttatgaaatttttattttgattaaaattataagtata 27021341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 39178126 - 39178184
Alignment:
Q  111 taatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||| |||| |||||| ||||||| | |||| ||| ||||||||||||||||||||||    
T  39178126 taatataacaaatataacaaaaattattatctattttaataacatcaacaatataacat 39178184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 39850490 - 39850416
Alignment:
Q  95 gtttatgttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||| ||| |||||||||| || | |||||||| ||||||| ||| |||| |||||| | |||||||||||||    
T  39850490 gtttatttttaaccaataatataataaatataatataaattcttatcatttttaataactttaacaatataacat 39850416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 9666237 - 9666176
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| || ||| ||||||||| |||||||| ||| ||| ||||||||||||||    
T  9666237 caataatataacaaatgtaacaaaaattcttatcttttttaattacaacaacaatataacat 9666176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 32870113 - 32870080
Alignment:
Q  21 aatattttgtatgaaattttaattttgattaaaa 54  Q
    |||||||| |||||||||||||||||||||||||    
T  32870113 aatattttttatgaaattttaattttgattaaaa 32870080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 39585108 - 39585063
Alignment:
Q  124 ataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||| |||||||||||||||||| ||||||| || |||||||||||    
T  39585108 ataacaaaaattctcatcttttttaataacaccatcaatataacat 39585063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 161
Target Start/End: Original strand, 39860231 - 39860296
Alignment:
Q  96 tttatgttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaa 161  Q
    ||||| |||||| ||||||| || | |||||||||| ||||| ||||||||||| |||| ||||||    
T  39860231 tttatcttttactaataatataaaaaatataataaacattcttatctttttcaaaaacaccaacaa 39860296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 41 - 88
Target Start/End: Original strand, 8515535 - 8515583
Alignment:
Q  41 aattttgattaaaattatatgtatagatgtttgtta-ttttaaatagta 88  Q
    ||||||||||||||||||||||||| || ||||| | ||||||||||||    
T  8515535 aattttgattaaaattatatgtatatatatttgtaacttttaaatagta 8515583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 17064614 - 17064646
Alignment:
Q  22 atattttgtatgaaattttaattttgattaaaa 54  Q
    ||||||| |||||||||||||||||||||||||    
T  17064614 atattttttatgaaattttaattttgattaaaa 17064646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Complemental strand, 17704362 - 17704322
Alignment:
Q  129 aaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||||||| |||||||| ||||||||||| ||||||||||    
T  17704362 aaaaattcttatcttttttaataacatcaataatataacat 17704322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 27263709 - 27263745
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  27263709 tattttatatgaaattttgattttgattaaaattata 27263745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 31172169 - 31172205
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  31172169 tattttatatgaaattttgattttgattaaaattata 31172205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 41879675 - 41879711
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  41879675 tattttatatgaaattttgattttgattaaaattata 41879711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 43370370 - 43370338
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaatta 57  Q
    |||| ||||||||||||||||||||||||||||    
T  43370370 ttttttatgaaattttaattttgattaaaatta 43370338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 25 - 169
Target Start/End: Original strand, 35258786 - 35258925
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca---ttagtttatgttttaccaataatacaaca 120  Q
    |||| ||||||||||| ||||| ||||||||||||||||||||||||||| | |||||||||||||||   | ||||||| | |||||||||            
T  35258786 ttttttatgaaattttgatttttattaaaattatatgtatagatgtttgtgacttttaaatagtaacaaactaagtttatctgttaccaata-------- 35258877  T
Q  121 gatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
     |||||||||||||||| |||||||||||||||||||||||||||||||    
T  35258878 -atataataaaaattcttatctttttcaataacatcaacaatataacat 35258925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 36637243 - 36637173
Alignment:
Q  95 gtttatgttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||| |||||||||||||| |||| |||||||||||||||| |||||||| |||||||  |||||||||    
T  36637243 gtttatcttttaccaataatataacaaatataataaaaattcttatcttttttaataacacaaacaatata 36637173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 17583286 - 17583225
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  17583286 caataatataacaaatataataaaaattcttatcttttttaataacaccaacaatataacat 17583225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 49428653 - 49428592
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||||| ||||||||| |||||||| ||||||| ||||||||||||||    
T  49428653 caataatataacaaatataagaaaaattcttatcttttttaataacagcaacaatataacat 49428592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 97 - 165
Target Start/End: Complemental strand, 44941419 - 44941351
Alignment:
Q  97 ttatgttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||| |||||||||||||| || | |||||||||||||||| ||| ||||||| |||| ||||||||||    
T  44941419 ttatattttaccaataatataataaatataataaaaattcttatcattttcaacaacaccaacaatata 44941351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 84
Target Start/End: Complemental strand, 33886552 - 33886509
Alignment:
Q  41 aattttgattaaaattatatgtatagatgtttgttattttaaat 84  Q
    ||||||||||||||||||||||||| |||||||| |||||||||    
T  33886552 aattttgattaaaattatatgtataaatgtttgtgattttaaat 33886509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 117 - 166
Target Start/End: Complemental strand, 35368386 - 35368337
Alignment:
Q  117 aacagatataataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    |||| ||||| |||||||||| |||||||| |||||||||||||||||||    
T  35368386 aacaaatatattaaaaattcttatcttttttaataacatcaacaatataa 35368337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 88
Target Start/End: Original strand, 36640450 - 36640519
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagta 88  Q
    |||| |||| ||||||||||| |||||||||||||||||||| ||| ||||| || | ||||||||||||    
T  36640450 caattttttttatgaaattttgattttgattaaaattatatgcataaatgttcgtgacttttaaatagta 36640519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 7639963 - 7640038
Alignment:
Q  21 aatattttgtatgaaatt--tta-attttgattaaaattatatgtatagatgtttgttattttaaatagtaacatt 93  Q
    |||||||| |||||||||  ||| ||||||||| |||||||| |||||||||||||  ||||||||| ||||||||    
T  7639963 aatattttttatgaaattagttatattttgattgaaattatacgtatagatgtttgcgattttaaattgtaacatt 7640038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 25440838 - 25440874
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||||||||||||||||||||||    
T  25440838 tattttatatgaaattttaattttgattaaaattata 25440874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 42522110 - 42522045
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    |||| ||||||||||| ||||| ||||||||||||||  ||||| ||||||| |||||||||||||||    
T  42522110 ttttatatgaaattttgatttttattaaaattatatg--tagatatttgttacttttaaatagtaaca 42522045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 32758219 - 32758270
Alignment:
Q  41 aattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    |||||||||||||||||||||||||||| ||| | | |||||||||||||||    
T  32758219 aattttgattaaaattatatgtatagatatttttgagttttaaatagtaaca 32758270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 45871145 - 45871188
Alignment:
Q  122 atataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||||||||||||| ||||||| | |||||||||||||||||    
T  45871145 atataataaaaattcttatcttttacgataacatcaacaatata 45871188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 26513006 - 26513072
Alignment:
Q  103 tttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||||||||||| |||  |||||||||||||||| ||||||||  |||| |  |||||||||||||    
T  26513006 tttaccaataatataactaatataataaaaattcttatcttttttgataaaacgaacaatataacat 26513072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 47415877 - 47415915
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagat 68  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  47415877 tatgaaattttaattttgattaaaattatagatatagat 47415915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 3806854 - 3806817
Alignment:
Q  22 atattttgtatgaaattttaattttgattaaaattata 59  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  3806854 atattttatatgaaattttgattttgattaaaattata 3806817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 21970234 - 21970185
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||| ||||||||||||||||||||||||| ||||  |||| ||||||||    
T  21970234 ttttttatgaaattttaattttgattaaaaatataaatataaatgtttgt 21970185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 21992670 - 21992621
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||| ||||||||||||||||||||||||| ||||  |||| ||||||||    
T  21992670 ttttttatgaaattttaattttgattaaaaatataaatataaatgtttgt 21992621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 39948963 - 39948902
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||||||||||||||| || ||||| || || | ||||||||||||||    
T  39948963 caataatataacaaatataataaaaattcttattttttttaacaagaccaacaatataacat 39948902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 21301651 - 21301687
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  21301651 tattttatatgaaattttgattttgattaaaattata 21301687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 25441361 - 25441397
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  25441361 tattttatatgaaattttgattttgattaaaattata 25441397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 33706513 - 33706549
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  33706513 tattttatatgaaattttgattttgattaaaattata 33706549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 37980482 - 37980446
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  37980482 tattttatatgaaattttgattttgattaaaattata 37980446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 44176891 - 44176927
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  44176891 tattttatatgaaattttgattttgattaaaattata 44176927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 44183573 - 44183609
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  44183573 tattttatatgaaattttgattttgattaaaattata 44183609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 11464028 - 11463911
Alignment:
Q  31 atgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca--ttagtttatgttttaccaataatacaacagatataa 127  Q
    |||||||||||||||||||||||||||| | |||| |||||||| | ||||||||||||| |  |  |||||  |||||||||||||| |||| ||||||    
T  11464028 atgaaattttaattttgattaaaattatctatataaatgtttgtgacttttaaatagtaaaaactatgtttaacttttaccaataatataacaaatataa 11463929  T
Q  128 taaaaattctcatctttt 145  Q
    |||||||||| |||||||    
T  11463928 taaaaattcttatctttt 11463911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 44717354 - 44717414
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataaca 168  Q
    |||||||| |||| ||| |||||||||||| |||||||| ||||||| |||||||||||||    
T  44717354 caataatataacaaataaaataaaaattcttatcttttttaataacaccaacaatataaca 44717414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 7614056 - 7614127
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgttattttaaatagtaaca 91  Q
    |||| |||| ||| |||||||||||||||||||||||||| || ||||||| ||   |||||||||||||||    
T  7614056 caatgttttttataaaattttaattttgattaaaattataagtgtagatgtctggatttttaaatagtaaca 7614127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 52675390 - 52675327
Alignment:
Q  102 ttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    ||||||||| |||| |||| |||| ||||||||||| |||||||||||||||| ||| ||||||    
T  52675390 ttttaccaacaatataacaaatatgataaaaattcttatctttttcaataacaccaataatata 52675327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 31970666 - 31970632
Alignment:
Q  31 atgaaattttaattttgattaaaattatatgtata 65  Q
    |||||||||||||||||||||||||||||||||||    
T  31970666 atgaaattttaattttgattaaaattatatgtata 31970632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Original strand, 4353612 - 4353661
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||| ||||||||||||||||| |||||||||||||||||| || |||||    
T  4353612 ttttttatgaaattttaatttttattaaaattatatgtataaatatttgt 4353661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 59
Target Start/End: Complemental strand, 18314203 - 18314166
Alignment:
Q  22 atattttgtatgaaattttaattttgattaaaattata 59  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  18314203 atattttgtatgaaattttgattttgattaaaattata 18314166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 40368201 - 40368152
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||| ||||||||||| ||||||||||||| |||| ||||||||||||||    
T  40368201 ttttttatgaaattttgattttgattaaaagtataggtatagatgtttgt 40368152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 10164172 - 10164208
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||||||||||||||| ||||||||||||||||||    
T  10164172 tattttgtatgaaattttgattttgattaaaattata 10164208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 11067085 - 11067145
Alignment:
Q  109 aataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||||| || | |||||| ||||||||| |||||||| ||||||| ||||||||||||||    
T  11067085 aataatataaaaaatataacaaaaattcttatcttttttaataacaccaacaatataacat 11067145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 16676685 - 16676717
Alignment:
Q  36 attttaattttgattaaaattatatgtatagat 68  Q
    |||||||||||||||||||||||||||||||||    
T  16676685 attttaattttgattaaaattatatgtatagat 16676717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 165
Target Start/End: Original strand, 10428263 - 10428306
Alignment:
Q  122 atataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||    
T  10428263 atataataaaaattcttatctttttcaagaacaccaacaatata 10428306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 167
Target Start/End: Complemental strand, 38340182 - 38340123
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataac 167  Q
    |||||||| |||| || ||||||||||||| |||||||| ||||||| ||| ||||||||    
T  38340182 caataatataacaaatgtaataaaaattcttatcttttttaataacaccaataatataac 38340123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 21968067 - 21968025
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    |||||| ||||||||||| |||||||||||||||||| |||||    
T  21968067 tattttatatgaaattttgattttgattaaaattataagtata 21968025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 26542817 - 26542775
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgttattttaaat 84  Q
    |||||||||||||||||||||||| || ||||| |||||||||    
T  26542817 attttgattaaaattatatgtatatatatttgtgattttaaat 26542775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 4968691 - 4968752
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||||| ||||||||| |||| | | ||||||| ||||||||||||||    
T  4968691 caataatataacaaatataacaaaaattcttatctatcttaataacaccaacaatataacat 4968752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 58
Target Start/End: Complemental strand, 8659352 - 8659303
Alignment:
Q  9 tagattatactcaatattttgtatgaaattttaattttgattaaaattat 58  Q
    ||||||||  |||||||||| ||||||||||| ||||| |||||||||||    
T  8659352 tagattatgatcaatattttttatgaaatttttattttaattaaaattat 8659303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 33129490 - 33129429
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||  |||| |||||||| |||||||||||||||| |||||||  |||| ||||||||    
T  33129490 caataatttaacaaatataatataaattctcatcttttttaataacacaaacactataacat 33129429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 8028561 - 8028597
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  8028561 tattttatatgaaattttgattttgattaaaattata 8028597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Complemental strand, 10390541 - 10390509
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaatta 57  Q
    |||| ||||||||||||||||||||||||||||    
T  10390541 ttttttatgaaattttaattttgattaaaatta 10390509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 13512439 - 13512403
Alignment:
Q  32 tgaaattttaattttgattaaaattatatgtatagat 68  Q
    |||||||| |||||||||||||||||||| |||||||    
T  13512439 tgaaatttaaattttgattaaaattatatctatagat 13512403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 42 - 74
Target Start/End: Complemental strand, 25788853 - 25788821
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgt 74  Q
    |||||||||||||||||||||||||||| ||||    
T  25788853 attttgattaaaattatatgtatagatgcttgt 25788821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 166
Target Start/End: Complemental strand, 26542744 - 26542684
Alignment:
Q  106 accaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    ||||| |||| |||| |||||||| ||| | | |||||||||||| |||||||||||||||    
T  26542744 accaacaataaaacaaatataatataaaattttatctttttcaatgacatcaacaatataa 26542684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 40808628 - 40808660
Alignment:
Q  22 atattttgtatgaaattttaattttgattaaaa 54  Q
    ||||||| |||||||||||||||||||||||||    
T  40808628 atattttttatgaaattttaattttgattaaaa 40808660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 7980649 - 7980521
Alignment:
Q  39 ttaattttgattaaaattatatgtatagatgtttgttattttaaatagtaaca--tta-gtttatgttttaccaataatacaacagatataataaaaatt 135  Q
    ||||||||||||||| |||| ||||||| | ||||| | ||||| |||||| |  ||| |||||| |||||||||||||| |||| ||||||||||||||    
T  7980649 ttaattttgattaaagttatgtgtatagttatttgtgactttaagtagtaagaaattatgtttatcttttaccaataataaaacaaatataataaaaatt 7980550  T
Q  136 ctcatctttttcaataacatcaacaatat 164  Q
    || |||||||| ||||| | |||||||||    
T  7980549 cttatcttttttaataaaaccaacaatat 7980521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 102 - 166
Target Start/End: Complemental strand, 8479050 - 8478986
Alignment:
Q  102 ttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    |||||||||||||| |||| |||||||||||||||| || ||||||| |||||||||||||||||    
T  8479050 ttttaccaataatataacaaatataataaaaattcttatatttttcattaacatcaacaatataa 8478986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 122 - 169
Target Start/End: Original strand, 22793691 - 22793738
Alignment:
Q  122 atataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||||||||||| |||||||| ||||||| ||||||||||||||    
T  22793691 atataataaaaattcttatctttttaaataacaccaacaatataacat 22793738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 13502734 - 13502806
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    |||| |||| |||||| |||| ||||| |||||||||||||||||| |||||||| | ||||||| |||||||    
T  13502734 caatcttttttatgaacttttgatttttattaaaattatatgtatacatgtttgtgacttttaaacagtaaca 13502806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 13846728 - 13846692
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||||||||||||||| ||||||||||||||||||    
T  13846728 tattttgtatgaaatttttattttgattaaaattata 13846692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 4577916 - 4577954
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagat 68  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  4577916 tatgaaattttaattttgattaaaattatagatatagat 4577954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 31383615 - 31383579
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  31383615 tattttatatgaaattttgattttgattaaaattata 31383579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 167
Target Start/End: Original strand, 41554752 - 41554898
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaac--atta-gtttatgttttaccaataatacaaca 120  Q
    |||||||||||||||| ||||| ||||| ||||||||||| ||||||||| | ||||||||| ||||  |||| |||||  |||||  ||||||  || |    
T  41554752 ttttgtatgaaattttgatttttattaagattatatgtatggatgtttgtgacttttaaataataacaaattatgtttagcttttattaataatttaata 41554851  T
Q  121 gatataataaaaattctcatctttttcaataacatcaacaatataac 167  Q
     |||||||||||||||| |||||||||||| ||  ||| ||||||||    
T  41554852 aatataataaaaattcttatctttttcaatgacgccaataatataac 41554898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 169
Target Start/End: Complemental strand, 23914666 - 23914592
Alignment:
Q  95 gtttatgttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||| ||| ||||| |||| |||| |||||||| ||||||| ||||||||||||||||  |||||||||||||    
T  23914666 gtttatctttaaccaacaatataacaaatataatataaattcttatctttttcaataacacaaacaatataacat 23914592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 162
Target Start/End: Original strand, 40303016 - 40303070
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaat 162  Q
    |||||||| |||| |||||||||||||||| |||||||| |||||||||||||||    
T  40303016 caataatataacaaatataataaaaattcttatcttttttaataacatcaacaat 40303070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 32908853 - 32908800
Alignment:
Q  21 aatattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||||||| ||||||||||  | |||||||||||||||||||||||||||||||    
T  32908853 aatattttttatgaaatttagaatttgattaaaattatatgtatagatgtttgt 32908800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 30 - 74
Target Start/End: Original strand, 32630612 - 32630656
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||||||||  |||||||||||||||||||||||||||||||||    
T  32630612 tatgaaatttagattttgattaaaattatatgtatagatgtttgt 32630656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 169
Target Start/End: Complemental strand, 10886607 - 10886564
Alignment:
Q  126 aataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||||||| |||||||| ||||||||||||||||||||||    
T  10886607 aataaaaattcttatcttttttaataacatcaacaatataacat 10886564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 92
Target Start/End: Complemental strand, 11259507 - 11259457
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgttattttaaatagtaacat 92  Q
    ||||||||||||||||||||||||||||||||| | || |||| |||||||    
T  11259507 attttgattaaaattatatgtatagatgtttgtgacttaaaattgtaacat 11259457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 41 - 169
Target Start/End: Complemental strand, 23914923 - 23914791
Alignment:
Q  41 aattttgattaaaattatatgtatagatgtttgtta-ttttaa---atagtaacattagtttatgttttaccaataatacaacagatataataaaaattc 136  Q
    |||||||||||||||||| ||||||||||||||| | ||||||   |||| ||  |  |||||| ||||||||| || | |||| | |||||| ||||||    
T  23914923 aattttgattaaaattatttgtatagatgtttgtgacttttaaattatagcaaactatgtttatcttttaccaacaagataacaaacataatataaattc 23914824  T
Q  137 tcatctttttcaataacatcaacaatataacat 169  Q
    | || ||||||||||  | ||||||||||||||    
T  23914823 ttatatttttcaatattaccaacaatataacat 23914791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 27058763 - 27058714
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||| |||||||||| ||||||||||||||||||||||||| || |||||    
T  27058763 ttttttatgaaatttcaattttgattaaaattatatgtatacatatttgt 27058714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 19317634 - 19317682
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtatagat 68  Q
    |||| |||| ||||||||||| ||||| |||||||||||||||||||||    
T  19317634 caatgttttttatgaaattttgattttcattaaaattatatgtatagat 19317682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Complemental strand, 38525950 - 38525898
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtatagatgttt 72  Q
    ||||||||| ||||||| |||| ||||||||||||||||| ||||| ||||||    
T  38525950 caatattttttatgaaaatttatttttgattaaaattataggtataaatgttt 38525898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 76
Target Start/End: Complemental strand, 15508783 - 15508732
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta 76  Q
    |||| ||||||||||| |||||||||||||||| || |||| ||||||||||    
T  15508783 ttttttatgaaattttgattttgattaaaattaaatatataaatgtttgtta 15508732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 165
Target Start/End: Complemental strand, 27649272 - 27649229
Alignment:
Q  122 atataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||||| ||||||| |||||||||||| ||||||||||||||    
T  27649272 atataatataaattcttatctttttcaatgacatcaacaatata 27649229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 103 - 165
Target Start/End: Original strand, 9740593 - 9740655
Alignment:
Q  103 tttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    ||||||||||||  |||| |||||||||||||||| ||| |||| |||||||  |||||||||    
T  9740593 tttaccaataatgtaacaaatataataaaaattcttatcatttttaataacactaacaatata 9740655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 34983837 - 34983779
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    |||||||| |||| |||||||||||||| |  ||||||| ||||||| |||||||||||    
T  34983837 caataatataacaaatataataaaaattattttcttttttaataacaccaacaatataa 34983779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 166
Target Start/End: Complemental strand, 12599600 - 12599539
Alignment:
Q  105 taccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    ||||||||||| |||| |||||||| ||||||| |||||| | ||| |||||||||| ||||    
T  12599600 taccaataatataacaaatataatataaattcttatctttcttaatgacatcaacaaaataa 12599539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 21392018 - 21392051
Alignment:
Q  41 aattttgattaaaattatatgtatagatgtttgt 74  Q
    |||||||||||||||||| |||||||||||||||    
T  21392018 aattttgattaaaattatttgtatagatgtttgt 21392051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 32217023 - 32217068
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    ||||||||| |||| |||||| |||||||||||||||||| |||||    
T  32217023 caatattttttatgcaattttgattttgattaaaattataagtata 32217068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 2383276 - 2383240
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  2383276 tattttatatgaaattttgattttgattaaaattata 2383240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 34196387 - 34196351
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  34196387 tattttatatgaaattttgattttgattaaaattata 34196351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 36213957 - 36213921
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  36213957 tattttatatgaaattttgattttgattaaaattata 36213921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 40324253 - 40324289
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  40324253 tattttatatgaaattttgattttgattaaaattata 40324289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 32 - 165
Target Start/End: Complemental strand, 6099783 - 6099647
Alignment:
Q  32 tgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaac--attagtttatgttttaccaataatacaacagatataat 128  Q
    |||||||||  |||| |||||||||||||||||| |||||||| |  |||||||||||||  | || ||||| ||||| ||||||||  ||| |||||||    
T  6099783 tgaaattttgttttttattaaaattatatgtataaatgtttgtgacatttaaatagtaacaaactattttatcttttatcaataatatgacaaatataat 6099684  T
Q  129 aaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||   | ||||||||| |||||||||| ||||||    
T  6099683 aaaaaaatttatctttttcgataacatcaataatata 6099647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 80
Target Start/End: Original strand, 45279970 - 45280020
Alignment:
Q  30 tatgaaattttaattttgattaaaattatatgtatagatgtttgttatttt 80  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||| |||||    
T  45279970 tatgaaattttgattttgattaaaagtatatgtatagatgtttgtgatttt 45280020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 13641003 - 13640942
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||||||||||||| |||||||||| ||||| | ||||||||||||||    
T  13641003 caataatataacaaatataataaaaattatcatcttttttaataaaaccaacaatataacat 13640942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 161
Target Start/End: Complemental strand, 20561358 - 20561228
Alignment:
Q  34 aaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaacatta---gtttatgttttaccaataatacaacagatataata 129  Q
    ||||||| ||||| |||||||||||||||||||||  |||| | |||||||  ||||||  |   |||||| |||||||||||||| || | ||||||||    
T  20561358 aaattttgattttcattaaaattatatgtatagatacttgtgacttttaaactgtaacaaaatatgtttatcttttaccaataatataaaa-atataata 20561260  T
Q  130 aaaattctcatctttttcaataacatcaacaa 161  Q
    ||| |||| ||| |||||||||| ||||||||    
T  20561259 aaatttcttatcgttttcaataatatcaacaa 20561228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 40358551 - 40358490
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| |||| | ||||||||| |||||||| ||||||||||||||||||||||    
T  40358551 caataatataacaaatatgacaaaaattcttatcttttttaataacatcaacaatataacat 40358490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 65
Target Start/End: Complemental strand, 47081502 - 47081459
Alignment:
Q  22 atattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||    
T  47081502 atattttttatgaaattttaattttgattaaaattatatatata 47081459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 5357524 - 5357474
Alignment:
Q  24 attttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    ||||| ||||||||||  |||||||||| ||||||||||||||||||||||    
T  5357524 attttttatgaaatttagattttgattagaattatatgtatagatgtttgt 5357474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 44549226 - 44549268
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    |||||| |||||||||||||||||||||||||||||| |||||    
T  44549226 tattttatatgaaattttaattttgattaaaattataagtata 44549268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 65
Target Start/End: Complemental strand, 22702659 - 22702614
Alignment:
Q  20 caatattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    ||||| ||||||||||||||| ||||| ||||||||||||||||||    
T  22702659 caatagtttgtatgaaattttgatttttattaaaattatatgtata 22702614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 29285638 - 29285586
Alignment:
Q  117 aacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||| |||||||| ||||||| || ||||||||||||| ||||||||||||||    
T  29285638 aacaaatataatataaattcttatgtttttcaataacaccaacaatataacat 29285586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 84
Target Start/End: Complemental strand, 5801332 - 5801273
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgttattttaaat 84  Q
    |||| ||||||||||||||||||||||||| || | ||||| |||||| || ||||||||    
T  5801332 ttttttatgaaattttaattttgattaaaagtaaaagtataaatgttttttcttttaaat 5801273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 91
Target Start/End: Complemental strand, 2998548 - 2998498
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    ||||| |||||||||||||||||| |||||||| | |||||||||||||||    
T  2998548 atttttattaaaattatatgtatatatgtttgtgacttttaaatagtaaca 2998498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 166
Target Start/End: Complemental strand, 13703384 - 13703326
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataa 166  Q
    |||||||| |||| |||||||||||||| |||||||||| ||||| |  ||||||||||    
T  13703384 caataatataacaaatataataaaaattatcatcttttttaataaaactaacaatataa 13703326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 14774345 - 14774379
Alignment:
Q  34 aaattttaattttgattaaaattatatgtatagat 68  Q
    |||||||||||||||||||||||||| ||||||||    
T  14774345 aaattttaattttgattaaaattataggtatagat 14774379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 15224798 - 15224832
Alignment:
Q  34 aaattttaattttgattaaaattatatgtatagat 68  Q
    |||||||||||||||||||||||||| ||||||||    
T  15224798 aaattttaattttgattaaaattataggtatagat 15224832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Complemental strand, 17264074 - 17264036
Alignment:
Q  21 aatattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  17264074 aatattttttctgaaattttaattttgattaaaattata 17264036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 165
Target Start/End: Original strand, 17771567 - 17771637
Alignment:
Q  95 gtttatgttttaccaataatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||||| |||||||||||| | |||  || |||||||||||||  ||||||||| ||||||| ||||||||    
T  17771567 gtttatcttttaccaataacataacgaatgtaataaaaattcttctctttttcagtaacatctacaatata 17771637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 84
Target Start/End: Original strand, 28737221 - 28737263
Alignment:
Q  42 attttgattaaaattatatgtatagatgtttgttattttaaat 84  Q
    |||||||||||||||||| ||||| |||||||| |||||||||    
T  28737221 attttgattaaaattataggtatatatgtttgtgattttaaat 28737263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 32675771 - 32675737
Alignment:
Q  34 aaattttaattttgattaaaattatatgtatagat 68  Q
    ||||||| |||||||||||||||||||||||||||    
T  32675771 aaattttgattttgattaaaattatatgtatagat 32675737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 59
Target Start/End: Original strand, 40356746 - 40356784
Alignment:
Q  21 aatattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||||| ||||||||||| ||||||||||||||||||    
T  40356746 aatattttatatgaaatttttattttgattaaaattata 40356784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 2475479 - 2475434
Alignment:
Q  122 atataataaaaattctcatctttttcaataacatcaacaatataac 167  Q
    |||||||||||||||| |||||||| | ||||| ||||||||||||    
T  2475479 atataataaaaattcttatcttttttagtaacaccaacaatataac 2475434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 74
Target Start/End: Complemental strand, 13640286 - 13640237
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaattatatgtatagatgtttgt 74  Q
    |||| ||| ||||||| |||||| |||||||||||| |||||||||||||    
T  13640286 ttttttataaaattttgattttgtttaaaattatatatatagatgtttgt 13640237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 80
Target Start/End: Complemental strand, 16847850 - 16847793
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgttatttt 80  Q
    |||||| ||||||||||||||||| |||||||  |||  |||| ||||||||||||||    
T  16847850 tattttttatgaaattttaattttaattaaaagcataaatataaatgtttgttatttt 16847793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 35079591 - 35079652
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| |||| || ||| ||||||||| |||||||| ||| ||| ||||||||||||||    
T  35079591 caataatataacaaatgtaacaaaaattcttatcttttttaattacaacaacaatataacat 35079652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 35365133 - 35365064
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattatatgtatagatgtttgtta-ttttaaatagtaaca 91  Q
    |||||| ||||||||||| |||||||||||||||||| ||| | || ||||| | |||||||| ||||||    
T  35365133 tattttatatgaaattttgattttgattaaaattataagtacaaatatttgtgacttttaaattgtaaca 35365064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 38237480 - 38237537
Alignment:
Q  112 aatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||| |||| |||||||| ||||||| |||||||||||| ||| ||||| ||||||||    
T  38237480 aatataacaaatataatataaattcttatctttttcaatgacaccaacagtataacat 38237537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 169
Target Start/End: Original strand, 40659437 - 40659498
Alignment:
Q  109 aataatacaacagatataataaaaa-ttctcatctttttcaataacatcaacaatataacat 169  Q
    ||||||| || | |||||||||||| |||| |||||||| ||||||| ||||||||||||||    
T  40659437 aataatataaaatatataataaaaaattcttatcttttttaataacaccaacaatataacat 40659498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 5096391 - 5096427
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  5096391 tattttatatgaaattttgattttgattaaaattata 5096427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 14625120 - 14625160
Alignment:
Q  129 aaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||||||| |||||||| ||||||||||| ||||||||||    
T  14625120 aaaaattcttatcttttttaataacatcaataatataacat 14625160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 24052528 - 24052564
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  24052528 tattttatatgaaattttgattttgattaaaattata 24052564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 37037218 - 37037174
Alignment:
Q  21 aatattttgtatgaaattttaattttgattaaaattatatgtata 65  Q
    |||| ||| |||||||||| |||||||||||||||||||| ||||    
T  37037218 aataatttttatgaaatttaaattttgattaaaattatatatata 37037174  T

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Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 38174978 - 38175010
Alignment:
Q  25 ttttgtatgaaattttaattttgattaaaatta 57  Q
    |||| ||||||||||||||||||||||||||||    
T  38174978 ttttttatgaaattttaattttgattaaaatta 38175010  T

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Target: scaffold1017 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1017
Description:

Target: scaffold1017; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 111 - 169
Target Start/End: Original strand, 2038 - 2096
Alignment:
Q  111 taatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    ||||| |||| |||||||||||||||| |||||||| |||||||  |||||||||||||    
T  2038 taatataacaaatataataaaaattcttatcttttttaataacacaaacaatataacat 2096  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 11746 - 11685
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||| || | |||||| ||||||||| |||||||| ||||||| ||||||||||||||    
T  11746 caataatataataaatataacaaaaattcttatcttttttaataacaccaacaatataacat 11685  T

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Target: scaffold0018 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 36864 - 36811
Alignment:
Q  112 aatacaacagatataataaaaattctcatctttttcaataacatcaacaatata 165  Q
    |||| |||| |||||||||||||||| |||||||| ||||||| ||||||||||    
T  36864 aatataacaaatataataaaaattcttatcttttttaataacaccaacaatata 36811  T

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Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 108 - 169
Target Start/End: Original strand, 226387 - 226448
Alignment:
Q  108 caataatacaacagatataataaaaattctcatctttttcaataacatcaacaatataacat 169  Q
    |||||||  |||| |||||||||||||||| || ||||| |||||||  |||||||||||||    
T  226387 caataatgtaacaaatataataaaaattcttattttttttaataacacgaacaatataacat 226448  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 59
Target Start/End: Complemental strand, 82012 - 81976
Alignment:
Q  23 tattttgtatgaaattttaattttgattaaaattata 59  Q
    |||||| ||||||||||| ||||||||||||||||||    
T  82012 tattttatatgaaattttgattttgattaaaattata 81976  T

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