View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20849_high_2 (Length: 356)
Name: NF20849_high_2
Description: NF20849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20849_high_2 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 27 - 347
Target Start/End: Complemental strand, 21565152 - 21564835
Alignment:
| Q |
27 |
tcactgggtgtgaaacccaaagaaccaactcaatcttgcagagacagtttgctagatgttcgattcttaacaaatttcaatgcaatctgcaattgcacaa |
126 |
Q |
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| T |
21565152 |
tcactggatgttaaacccaaagaaccaactcaatcttgtagagacagtttgctagatgtttgattcttaacaaatttcaatgcaatctgcgattgcacaa |
21565053 |
T |
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| Q |
127 |
tggtcacttcttttctttaaataactgaaactagaataatttttccatccattttaggacaacaaaatgatttggatttaatagattaaatttaaggttt |
226 |
Q |
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| T |
21565052 |
tggtcacttcttttctccaaataactgaaacta--ataatttttccatctattttaggacaacaaaatgatttggatttaatagattaaatttaaggttt |
21564955 |
T |
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| Q |
227 |
tattagattgattaatgctagaaatgggcatattgaagggatttgtgggtagttaaaggaaggagggggttttcgagcaagagattgtggtctttgaggg |
326 |
Q |
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| T |
21564954 |
tattagattgattaatgctagaaatgggcatattgaagggatttgtggatagttaaaggaagaagggggttttcgagc-agagattgtggtctttgaggg |
21564856 |
T |
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| Q |
327 |
gtaagactgctggctctgtgg |
347 |
Q |
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| T |
21564855 |
gtaagactgctggctctgtgg |
21564835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 220
Target Start/End: Original strand, 13414921 - 13415022
Alignment:
| Q |
119 |
ttgcacaatggtcacttcttttctttaaataactgaaactagaataatttttccatccattttaggacaacaaaatgatttggatttaatagattaaatt |
218 |
Q |
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|||||||||| || |||||||||||| |||||| | ||||||||| | |||||| |||| | ||| ||| ||| ||||||||||||| |||||||| |
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| T |
13414921 |
ttgcacaatgatcgcttcttttctttgaataaccggaactagaatctctcttccattcattgttagacgacataatattttggatttaataaattaaatt |
13415020 |
T |
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| Q |
219 |
ta |
220 |
Q |
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| T |
13415021 |
ta |
13415022 |
T |
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