View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20849_high_3 (Length: 350)
Name: NF20849_high_3
Description: NF20849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20849_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 26 - 325
Target Start/End: Complemental strand, 51856603 - 51856304
Alignment:
| Q |
26 |
atcaatctcgttttaaaacaggtttaatcaatctagtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatc |
125 |
Q |
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| T |
51856603 |
atcaatctcgttttaaatcaggtttaatcgatctagtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattagagatgaaaatc |
51856504 |
T |
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| Q |
126 |
agtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaat |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51856503 |
agtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaat |
51856404 |
T |
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| Q |
226 |
aaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
325 |
Q |
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| T |
51856403 |
aaaatcaatttaactaaaagtagcaacattattatacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
51856304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 91
Target Start/End: Complemental strand, 51856711 - 51856680
Alignment:
| Q |
60 |
agtttgaagggtaacaagccactcttatattg |
91 |
Q |
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| T |
51856711 |
agtttgaagggtaacaagccactcttatattg |
51856680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 60 - 325
Target Start/End: Complemental strand, 8945755 - 8945490
Alignment:
| Q |
60 |
agtttgaagggtaacaagccactcttatattgctgnnnnnnnagacgaaaattagagatgaaaatcagtctcaaagttcaatgtaatgttaactattact |
159 |
Q |
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| T |
8945755 |
agtttgaagggtaacaagccactcttatattgctgtttttttagacgaaaattatagatgaaaatcagtctcaaagttcaatgtaatgttaactattact |
8945656 |
T |
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| Q |
160 |
gttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattatta |
259 |
Q |
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| T |
8945655 |
gttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggcattacagaaaaataaaatcaatttaactaaaagtagcaacattatta |
8945556 |
T |
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| Q |
260 |
tacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
325 |
Q |
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| T |
8945555 |
tacataataagaattctttttatgacattctctacctattttcccttttgacaatgtagatactta |
8945490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 114 - 230
Target Start/End: Original strand, 128421 - 128536
Alignment:
| Q |
114 |
gagatgaaaatcagtctcaaagttcaatgtaatgttaactattactgttattttgtaagcaatattcttgacaatttattgcaacaataggtcaaaggca |
213 |
Q |
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||||||||||| ||||||||||||||||||| | ||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||||||||||| | |
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| T |
128421 |
gagatgaaaattagtctcaaagttcaatgtattattaactattactgttcttttgta-gcaatactcttaacaatttattgcaacaataggtcaaaggta |
128519 |
T |
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| Q |
214 |
ttacagaaaaataaaat |
230 |
Q |
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| T |
128520 |
ttacagaaaaaaaaaat |
128536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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