View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20849_high_4 (Length: 350)
Name: NF20849_high_4
Description: NF20849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20849_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 80 - 342
Target Start/End: Complemental strand, 31769546 - 31769284
Alignment:
| Q |
80 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
179 |
Q |
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| T |
31769546 |
atttgaattgtgtatataggactatatttggcaaacatttaagatttcagaaaatcaaattgatacgatttattttgtatgcaccaataaggaccaattg |
31769447 |
T |
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| Q |
180 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
279 |
Q |
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| T |
31769446 |
gaatataacatttttggcaaaagtggatcccctattggtgacaagaccctgaaatgagcaccaaaaagaagctgtccaatgtgaaggtgagcaagatatg |
31769347 |
T |
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| Q |
280 |
acaccaatattaataattttggaagggcactagacaggacacccccactagaccagaataatc |
342 |
Q |
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| T |
31769346 |
acaccaatattaataattttggaagggcactagacaggacacccccactagaccagaagaatc |
31769284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 31769582 - 31769532
Alignment:
| Q |
21 |
acatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
71 |
Q |
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| T |
31769582 |
acatcatcaagtaattgcctacacactccaaaaaagatttgaattgtgtat |
31769532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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