View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20849_high_5 (Length: 337)
Name: NF20849_high_5
Description: NF20849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20849_high_5 |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 69 - 210
Target Start/End: Original strand, 3077277 - 3077418
Alignment:
| Q |
69 |
caggatacgtttcaagagcttatattttaattatctatgctaaagtcgtaatttgataatgctatatgttattcattttcttatatctataccacggaag |
168 |
Q |
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| T |
3077277 |
caggatacatttcaagagcttatattttaattatctatgctaaaatcgtaatctgataatgctatatgttattcattttcttatatctatacaatggaag |
3077376 |
T |
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| Q |
169 |
aaaggggttcttacttatctacttctaagaatcactaatgat |
210 |
Q |
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| T |
3077377 |
aaaggggttcttacttatctacttctaagaatcactaatgat |
3077418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 3077182 - 3077242
Alignment:
| Q |
7 |
tagattatactttgtgctattgaaagttgagaatttattctgatattgatatggatgtatt |
67 |
Q |
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| T |
3077182 |
tagattatattttgtgctattgaaagttgagaatttattctgatattgatatggatgtatt |
3077242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 160
Target Start/End: Original strand, 11505105 - 11505189
Alignment:
| Q |
77 |
gtttcaagagcttatattttaattatctat-gctaaagtcgtaatttgataatgctatatgttattcattttcttatatctatac |
160 |
Q |
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| T |
11505105 |
gtttcaagagattatattttaattatcttttgctaaaatcataatttgaatgtgatatatgttattcattttcttatatctatac |
11505189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 6097206 - 6097156
Alignment:
| Q |
18 |
ttgtgctattgaaagttgagaatttattctgatattgatatggatgtattg |
68 |
Q |
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| T |
6097206 |
ttgtgctgttgaaaattgataatttattctgatacttatatggatgtattg |
6097156 |
T |
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