View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20849_high_6 (Length: 334)

Name: NF20849_high_6
Description: NF20849
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20849_high_6
NF20849_high_6
[»] chr1 (4 HSPs)
chr1 (30-325)||(6871244-6871539)
chr1 (30-88)||(10799246-10799304)
chr1 (31-95)||(32423517-32423579)
chr1 (31-94)||(31283772-31283835)
[»] chr8 (5 HSPs)
chr8 (30-95)||(14239217-14239283)
chr8 (53-95)||(13380482-13380524)
chr8 (54-95)||(14988507-14988548)
chr8 (31-88)||(26055498-26055555)
chr8 (29-86)||(36665240-36665297)
[»] chr7 (2 HSPs)
chr7 (30-95)||(37829969-37830034)
chr7 (30-89)||(33084908-33084967)
[»] chr3 (3 HSPs)
chr3 (49-94)||(48308090-48308135)
chr3 (33-95)||(23481386-23481449)
chr3 (56-89)||(54913673-54913706)
[»] scaffold0570 (1 HSPs)
scaffold0570 (33-94)||(9084-9146)
[»] chr2 (1 HSPs)
chr2 (34-95)||(41508139-41508200)
[»] chr6 (1 HSPs)
chr6 (38-94)||(2477263-2477319)
[»] chr4 (1 HSPs)
chr4 (38-94)||(27112403-27112459)


Alignment Details
Target: chr1 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 30 - 325
Target Start/End: Original strand, 6871244 - 6871539
Alignment:
Q  30 ctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattcnnnnnnntaaaataaatttggcatgccgttaatt 129  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  6871244 ctgggttcaaacctgaacgaataagtatatactaatctaataactaactactaacatttgtcatttaaaaaaataaaataaatttggcatgccgttaatt 6871343  T
Q  130 aaatgtgcagcagtgaaaaccacatcaccccataattaattgttaggctttgattttgagaaactcagaattttattttaaagatatatgtattacaatt 229  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6871344 aaatgtgcagtagtgaaaaccacatcaccccataattaattgttaggctttgattttgagaaactcagaattttattttaaagatatatgtattacaatt 6871443  T
Q  230 gaaaattcatttaattttggttttgtgaataatgaaaaaacttcgtaaattttatagtggctgatgttagttttccctttttacacaggtctgtgg 325  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6871444 gaaaattcatttaattttggttttgtgaataatgaaaaaacttcgtaaattttatagtggctgatgttagttttccctttttacacaggtctgtgg 6871539  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 10799246 - 10799304
Alignment:
Q  30 ctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacattt 88  Q
    ||||||||||||| ||| |||  |||||||| |||||||| |||||| |||||||||||    
T  10799246 ctgggttcaaaccaggatgaaggagtaaatattaatctaacaactaattactaacattt 10799304  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 95
Target Start/End: Complemental strand, 32423579 - 32423517
Alignment:
Q  31 tgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattc 95  Q
    |||||||||||| |||| ||  |||||||| |||||||||  ||||||| |||||||||||||||    
T  32423579 tgggttcaaacccggacaaaggagtaaatattaatctaat--ctaactattaacatttgtcattc 32423517  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 31 - 94
Target Start/End: Original strand, 31283772 - 31283835
Alignment:
Q  31 tgggttcaaacctggacgaataagtaaatactaatctaataa-ctaactactaacatttgtcatt 94  Q
    |||||||||||||| |||| | |||||||| |||||||| || ||||||||||| ||||||||||    
T  31283772 tgggttcaaacctg-acgattgagtaaatattaatctaacaaactaactactaatatttgtcatt 31283835  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 14239283 - 14239217
Alignment:
Q  30 ctgggttcaaacctggacgaataagtaaa-tactaatctaataactaactactaacatttgtcattc 95  Q
    ||||||| |||||||||||||| |||||| || ||||||||||||||||| ||| ||||||||||||    
T  14239283 ctgggtttaaacctggacgaatgagtaaaatattaatctaataactaacttctaccatttgtcattc 14239217  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 53 - 95
Target Start/End: Original strand, 13380482 - 13380524
Alignment:
Q  53 agtaaatactaatctaataactaactactaacatttgtcattc 95  Q
    |||||||| |||||||| |||||||||||| ||||||||||||    
T  13380482 agtaaatattaatctaacaactaactactagcatttgtcattc 13380524  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 95
Target Start/End: Original strand, 14988507 - 14988548
Alignment:
Q  54 gtaaatactaatctaataactaactactaacatttgtcattc 95  Q
    ||||||| |||||||||||| ||||||||||||||| |||||    
T  14988507 gtaaatattaatctaataaccaactactaacatttgacattc 14988548  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 26055498 - 26055555
Alignment:
Q  31 tgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacattt 88  Q
    ||||||||||| || | |||  |||||||| ||||||||||||||| |||||||||||    
T  26055498 tgggttcaaacttgaatgaaagagtaaatattaatctaataactaattactaacattt 26055555  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Complemental strand, 36665297 - 36665240
Alignment:
Q  29 actgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacat 86  Q
    |||||||||||||| |||| ||  | |||||| |||||||| ||||||||||||||||    
T  36665297 actgggttcaaacccggacaaaggaataaatattaatctaacaactaactactaacat 36665240  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 30 - 95
Target Start/End: Original strand, 37829969 - 37830034
Alignment:
Q  30 ctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattc 95  Q
    |||| |||||||| |||||||  |||| ||| |||||||| |||||| ||||||||||||||||||    
T  37829969 ctggcttcaaacccggacgaaggagtagatattaatctaacaactaattactaacatttgtcattc 37830034  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 89
Target Start/End: Complemental strand, 33084967 - 33084908
Alignment:
Q  30 ctgggttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttg 89  Q
    ||||||| |||||||||||||  || ||| |||||||||| |||||| ||||||||||||    
T  33084967 ctgggttaaaacctggacgaaggagaaaaaactaatctaacaactaattactaacatttg 33084908  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 94
Target Start/End: Complemental strand, 48308135 - 48308090
Alignment:
Q  49 aataagtaaatactaatctaataactaactactaacatttgtcatt 94  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||||    
T  48308135 aataattaaatattaatctaacaactaactactaacatttgtcatt 48308090  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 95
Target Start/End: Complemental strand, 23481449 - 23481386
Alignment:
Q  33 ggttcaaacctggacgaataagtaaatact-aatctaataactaactactaacatttgtcattc 95  Q
    ||||||||||||||||||  ||| |||||| ||||||| ||||||||||||  |||||||||||    
T  23481449 ggttcaaacctggacgaaatagtcaatacttaatctaacaactaactactaggatttgtcattc 23481386  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 89
Target Start/End: Complemental strand, 54913706 - 54913673
Alignment:
Q  56 aaatactaatctaataactaactactaacatttg 89  Q
    |||||||||||||| |||||||||||||||||||    
T  54913706 aaatactaatctaacaactaactactaacatttg 54913673  T

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Target: scaffold0570 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0570
Description:

Target: scaffold0570; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 9084 - 9146
Alignment:
Q  33 ggttcaaacctggacgaataagtaaatact-aatctaataactaactactaacatttgtcatt 94  Q
    ||||||||||||||||||  ||| |||||| ||||||| ||||||||||||  ||||||||||    
T  9084 ggttcaaacctggacgaaatagtcaatacttaatctaacaactaactactaggatttgtcatt 9146  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 95
Target Start/End: Complemental strand, 41508200 - 41508139
Alignment:
Q  34 gttcaaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcattc 95  Q
    ||||||||| |||||||  |||||||| |||| ||| |||||| | ||||||||||||||||    
T  41508200 gttcaaacccggacgaaggagtaaatattaatataacaactaattgctaacatttgtcattc 41508139  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 2477263 - 2477319
Alignment:
Q  38 aaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcatt 94  Q
    ||||| ||| ||| ||||||||| |||||||| || ||| |||||||||||||||||    
T  2477263 aaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgtcatt 2477319  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 94
Target Start/End: Complemental strand, 27112459 - 27112403
Alignment:
Q  38 aaacctggacgaataagtaaatactaatctaataactaactactaacatttgtcatt 94  Q
    ||||| ||| ||| ||||||||| |||||||| || ||| |||||||||||||||||    
T  27112459 aaaccaggatgaaaaagtaaatattaatctaacaattaattactaacatttgtcatt 27112403  T

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