View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-1 (Length: 903)
Name: NF2085-Insertion-1
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-1 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 729; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 51 - 903
Target Start/End: Complemental strand, 39241398 - 39240540
Alignment:
| Q |
51 |
actgaatgaaactggaactgtaagcacaacatttcttattggtcttttcagatgagtttcagtcatcagtcttagctccaccagaaacattgcaagcact |
150 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39241398 |
actgaatgaaactggaactgtaagcacaacatttcttattggtcgtttcagatgagtttcagtcatcagtcttagctccaccagaaacattgcaagcact |
39241299 |
T |
|
| Q |
151 |
tcttctggactggtggatctccatatattgttcactaatgtggcaacaaagttggcgaactccaatgtccatggtctgcaccaaaaaagggagattttta |
250 |
Q |
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|||||||||||||||||||||||||||||||||||| ||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39241298 |
tcttctggactggtggatctccatatattgttcactgatgcggcaataaagg-ggcgaactccaatgtccatggtctgcaccaaaaaagggagattttta |
39241200 |
T |
|
| Q |
251 |
cttgcacggacaacgatggggtcggtatcaactctcccaatcaagcgtttcacattgaaaattgtatctccaaatagcaactcacgcttgcgggagagtt |
350 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
39241199 |
cttgcacggaccacgatggggtcggtatcaactctcccaatcaagtgtttcacattgaaaattgtatctccaaatagcaactcacgctcgcgggagagtt |
39241100 |
T |
|
| Q |
351 |
cgctggtaactctactagaaggggattcatctttgaaagtcacaaatgattttataagcttctgatttcttttgtttttcaaaatctccacttaggaacc |
450 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39241099 |
cgctggtaactctactagaaggggattcatctttgaaagtcacaaatgattttataagcttctgatttcttttgtttttcaaaatctccacttgggaacc |
39241000 |
T |
|
| Q |
451 |
attccatacagctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaagagttagtttcttttcctctccagtggttccactgccg |
550 |
Q |
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| T |
39240999 |
attccatactgctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaaaagctagtttcttttcctctccagtggttccactgcca |
39240900 |
T |
|
| Q |
551 |
gtcgccacagtgtatgcagattttgccatcttgcatttaacagaagggagggttgagagagttttctaccaaacaatatgatatagaaaacaaaacaatt |
650 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39240899 |
gttgccacagtgtat----attttgccatcttgcatttaacagaagggagggttgagagagttttctaccaaacaatatgatatagaaaacaaaacaatt |
39240804 |
T |
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| Q |
651 |
caaactcatagcttaaataattaacagctactcatacataactactttgtttgaaaaattcatatatggaaaaatcgagcactcttaatctaaaaaccca |
750 |
Q |
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| T |
39240803 |
caaactcatagcttaaataattaagagctactcagacataactactttgtttgaaaaattcatatatggaaaaatcgagcactcttaatctaaaaaccca |
39240704 |
T |
|
| Q |
751 |
cacagtcactatcggaaagaggacaaagacaatgcaattatctaaatgtgattgt-----------ttatgacttatccatacttttcagtatacaacaa |
839 |
Q |
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| T |
39240703 |
cacagtcactatcggaaagaggacaaagacaatgcaattatctaaatgtgattgtggtatgctttattatgacttatccatacttttcagtatacaacaa |
39240604 |
T |
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| Q |
840 |
tgataggagtaagcttgcacctttcagttttcactaccacagcagaaaataaaattataaatat |
903 |
Q |
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| T |
39240603 |
tgataggagtaagcttgcacttttcagttttcactaacacagcagaaaataaaattataaatat |
39240540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 8 - 515
Target Start/End: Complemental strand, 807783 - 807280
Alignment:
| Q |
8 |
cagccatcgcacaagcatgctctaggcgggtcagctggaaacaactgaatgaaactggaactgtaagcacaacatttcttattggtcttttcagatgagt |
107 |
Q |
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|||||||||| |||||| |||||| ||||||||||||||| | |||||||||||| || || |||||||| ||||||||||| |||| ||| |||||||| |
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| T |
807783 |
cagccatcgcgcaagcacgctctaagcgggtcagctggaagcgactgaatgaaaccggcacagtaagcaccacatttcttatcggtcgtttgagatgagt |
807684 |
T |
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| Q |
108 |
ttcagtcatcagtcttagctccaccagaaacattgcaagcacttcttctggactggtggatctccatatattgttcactaatgtggcaacaaagttggcg |
207 |
Q |
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||||||||||||||||| ||||||||||||||||||||| |||||||| ||| ||||||||||||| | |||||||||||| | |||| |||| | || |
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| T |
807683 |
ttcagtcatcagtcttaactccaccagaaacattgcaaggacttcttcgggagtggtggatctccaaacattgttcactaacgcagcaataaag-ggacg |
807585 |
T |
|
| Q |
208 |
aactccaatgtccatggtctgcaccaaaaaagggagatttttacttgcacggacaacgatggggtcggtatcaactctcccaatcaagcgtttcacattg |
307 |
Q |
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||| |||||||||| ||||||||||| ||| || ||||||||||||||| | ||| | ||||| ||||||||||| || ||||||||||||| ||| |
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| T |
807584 |
aacgccaatgtccaaggtctgcaccagaaatggcagatttttacttgcatg---aaccacagggtcagtatcaactctgccgatcaagcgtttcatgttg |
807488 |
T |
|
| Q |
308 |
aaaattgtatctccaaatagcaactcacgcttgcgggagagttcgctggtaactctactagaaggggattcatctttgaaagtcacaaatgattttataa |
407 |
Q |
| |
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||||| ||||||||||| |||| |||| ||| |||||| || || ||||||| | |||||| | |||||||||||| ||||||||||| || |||| |
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| T |
807487 |
aaaatcgtatctccaaacagcatctcatgctcatgggagaattgactagtaactcctccagaaggagcttcatctttgaatgtcacaaatgacttcataa |
807388 |
T |
|
| Q |
408 |
gcttctgatttcttttgtttttcaaaatctccacttaggaaccattccatacagctacactgcattgtgaggtgccaatatcaattccaactgctatttc |
507 |
Q |
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||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||| || || |||||||||||||||||||||||||||| |||||||| |
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| T |
807387 |
gcttctgatttcttttgtttttcaaaagctccacttcggagccattccacacagcaacgctacattgtgaggtgccaatatcaattccaatcgctatttc |
807288 |
T |
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| Q |
508 |
aggaagag |
515 |
Q |
| |
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|||||||| |
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| T |
807287 |
aggaagag |
807280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 427 - 515
Target Start/End: Original strand, 44728680 - 44728768
Alignment:
| Q |
427 |
tttcaaaatctccacttaggaaccattccatacagctacactgcattgtgaggtgccaatatcaattccaactgctatttcaggaagag |
515 |
Q |
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|||| ||||||||||| |||||||||||| |||| |||| |||| |||| ||||||| |||||||||| || |||||||||||||| |
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| T |
44728680 |
tttccaaatctccactctggaaccattccacacagaaacacagcatggtgatctgccaatgtcaattccaagtgttatttcaggaagag |
44728768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 112
Target Start/End: Original strand, 47879938 - 47880001
Alignment:
| Q |
49 |
caactgaatgaaactggaactgtaagcacaacatttcttattggtcttttcagatgagtttcag |
112 |
Q |
| |
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|||||||| |||||||||||||||| ||| ||||||||||| ||| |||||| |||||||||| |
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| T |
47879938 |
caactgaaggaaactggaactgtaaacactacatttcttatccgtcgtttcagttgagtttcag |
47880001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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