View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-11 (Length: 692)
Name: NF2085-Insertion-11
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-11 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 661; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 661; E-Value: 0
Query Start/End: Original strand, 8 - 692
Target Start/End: Complemental strand, 42083796 - 42083112
Alignment:
| Q |
8 |
aatgcaggtagaagctaatgttggtgccccccaagcaaactatagggaaagcatttctgaagtcacagaagtgaggtatgtgttcaataaaccatacatt |
107 |
Q |
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| T |
42083796 |
aatgcaggtagaagctaatgttggtgctccccaagcaaactatagggaaagcatttctgaagtcacagaagtgaggtatgtgttcaataaaccatacatt |
42083697 |
T |
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| Q |
108 |
ttgaacccatggacccaagtagtggatacaaatttgagaataaaatcaaagaagaagcacttccagaagaattcattatactggggtttttaaaggattg |
207 |
Q |
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| T |
42083696 |
ttgaacccatggacccaagtagtggatacaaatttgagaataaaatcaaagaagaagcacttccagaagaattcattatactggggtttttaaaggattg |
42083597 |
T |
|
| Q |
208 |
gaaaagtgcatgagcaatggtgttctagccggctttccggttgttggtgtacgcgcagtacttgtggatagtacttaccatgatgtggattcaagtgtga |
307 |
Q |
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| T |
42083596 |
gaaaattgcatgagcaatggtgttctagccggctttccggttgttggtgtacgcgcagtacttgtggatagtacttaccatgatgtggattcaagtgtga |
42083497 |
T |
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| Q |
308 |
aggcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaacctacaatgaaacttgaagttgttactcc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42083496 |
aggcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaacctacaatgaaacttgaagttgttactcc |
42083397 |
T |
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| Q |
408 |
tgaagaacattatgaagatgtacttggtgatctcagcagaagaagaggccaaatcataagtgttagtgagaaaccagataaactctacgtaagtcacaaa |
507 |
Q |
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| T |
42083396 |
tgaagaacattatgaagatgtacttggtgatctcagcagaagaagaggccaaatcataagtgttggtgagaaaccagataaactctacgtaagtcacaaa |
42083297 |
T |
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| Q |
508 |
accttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgtagcaccgatgcttcatattcaagaaagacgtatctggtgtc |
607 |
Q |
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| T |
42083296 |
accttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgcagcaccgatgcttcatattaaagaaagacgtatctggtgtc |
42083197 |
T |
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| Q |
608 |
cgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagttgtgtttgttgtatcatcta |
692 |
Q |
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| T |
42083196 |
cgacacttgtagttacattcaatttcttccatttttcaaattattatcgatgtcaatgtctcagttgtgtttgttgtatcatcta |
42083112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 110 - 666
Target Start/End: Complemental strand, 42087209 - 42086665
Alignment:
| Q |
110 |
gaacccatggacccaagtagtggatacaaatttgagaataaaatcaaagaagaagcacttccagaagaattcattatactggggtttttaaaggattgga |
209 |
Q |
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||||| ||||| ||| |||||||||| |||| ||| | ||||||||| || |||| ||||| |||||| |||| |||||||| ||||||||||||| |
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| T |
42087209 |
gaaccaatggagccaggtagtggatatgaattcaagagtgaaatcaaaggaggagcagttccaaaagaatacattc--ctggggttgttaaaggattgga |
42087112 |
T |
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| Q |
210 |
aaagtgcatgagcaatggtgttctagccggctttccggttgttggtgtacgcgcagtacttgtggatagtacttaccatgatgtggattcaagtgtgaag |
309 |
Q |
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| T |
42087111 |
agagtgtatgagcaatggtgttctggccggatttccagttgtcgatgtacgtgcagtacttgtggatggttcttaccatgatgtagattcaagtgtgttg |
42087012 |
T |
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| Q |
310 |
gcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaacctacaatgaaacttgaagttgttactcctg |
409 |
Q |
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| T |
42087011 |
gctttccagttggcagcaagaggagcttttcgggaaggaataagaaaagccggaccgagaatgcttgaacctataatgaaagttgaagttgttactcctg |
42086912 |
T |
|
| Q |
410 |
aagaacattatgaagatgtacttggtgatctcagcagaagaagaggccaaatcataagtgttagtgagaaaccagataaactctacgtaagtcacaaaac |
509 |
Q |
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||||||||| | ||||||| |||||||||||| | ||||||||||||||||| ||| || |||| ||||||| | |||| | |||||||||||||| |
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| T |
42086911 |
aagaacatttaggagatgtaattggtgatctcaactcaagaagaggccaaatcaatagttttggtgacaaaccaggtggactcaaggtaagtcacaaaac |
42086812 |
T |
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| Q |
510 |
cttatcgtccatgttcatttattaaattttaagatattaattatttgaaagctatgtagcaccgatgcttcatattcaagaaagacgtatctggtgtccg |
609 |
Q |
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| T |
42086811 |
cctttc-tccatgtgcatatattaaatttgaaggt----atgatttgaaagctatgtagca-cgacacttcatatt----aatgacgtatctggtgtcca |
42086722 |
T |
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| Q |
610 |
acacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgt |
666 |
Q |
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| T |
42086721 |
atacttgtagttacattcaatttcatccatttttaaaattgttattgatgtcaatgt |
42086665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 42087344 - 42087289
Alignment:
| Q |
9 |
atgcaggtagaagctaatgttggtgccccccaagcaaactatagggaaagcatttc |
64 |
Q |
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|||||||| ||||||||||||||||| ||||||| |||||| |||||||||||||| |
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| T |
42087344 |
atgcaggttgaagctaatgttggtgctccccaagtaaactacagggaaagcatttc |
42087289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 382
Target Start/End: Original strand, 29242409 - 29242508
Alignment:
| Q |
282 |
ttaccatgatgtggattcaagtgtgaaggcattccagttggcagcaagcctagcttttatggaaggaatgagaaaagccaaaccattaatgcttgaacct |
381 |
Q |
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| T |
29242409 |
ttaccatgatgtggattcaagtgtgttggc-tttcagttggcagcaagacgagtttttcaagaaggaataagaaaagccggaccgaaaatgcttgaacct |
29242507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 604 - 655
Target Start/End: Original strand, 22284482 - 22284533
Alignment:
| Q |
604 |
tgtccgacacttgtagttacattcaatttcttccatttttcaaattattatc |
655 |
Q |
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| T |
22284482 |
tgtccgacacatgcagttacattcaaatttttccatttttcaaattattatc |
22284533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 37603961 - 37603915
Alignment:
| Q |
615 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
661 |
Q |
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| T |
37603961 |
tgtatttacattcaatttcttccatttttcaaattgttatcggtgtc |
37603915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 608 - 672
Target Start/End: Complemental strand, 3262086 - 3262022
Alignment:
| Q |
608 |
cgacacttgtagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
672 |
Q |
| |
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|||||| ||||||||| |||||||||||| ||||| |||||||||| ||||||||| ||||| |
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| T |
3262086 |
cgacacatgtagttactttcaatttcttctattttgaaaattattataaatgtcaatgtgtcagt |
3262022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 617 - 672
Target Start/End: Complemental strand, 6933194 - 6933139
Alignment:
| Q |
617 |
tagttacattcaatttcttccatttttcaaattattatcgttgtcaatgtctcagt |
672 |
Q |
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||||||| ||||||||||||||||||||||| || ||||| |||| |||| ||||| |
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| T |
6933194 |
tagttactttcaatttcttccatttttcaaaatactatcggtgtcgatgtgtcagt |
6933139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 610 - 655
Target Start/End: Complemental strand, 18626976 - 18626931
Alignment:
| Q |
610 |
acacttgtagttacattcaatttcttccatttttcaaattattatc |
655 |
Q |
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|||| |||||||| ||||| ||||||||| |||||||||||||||| |
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| T |
18626976 |
acacatgtagttatattcagtttcttccagttttcaaattattatc |
18626931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 615 - 661
Target Start/End: Complemental strand, 30922574 - 30922528
Alignment:
| Q |
615 |
tgtagttacattcaatttcttccatttttcaaattattatcgttgtc |
661 |
Q |
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| T |
30922574 |
tgtagttacattcaatttattgcatttttctaattattatcattgtc |
30922528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 615 - 666
Target Start/End: Original strand, 8217034 - 8217086
Alignment:
| Q |
615 |
tgtagttacattcaatttcttccatttt-tcaaattattatcgttgtcaatgt |
666 |
Q |
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||||||||||||||||| |||| ||||| | ||||||||||||||||| |||| |
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| T |
8217034 |
tgtagttacattcaattccttctattttctaaaattattatcgttgtctatgt |
8217086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 619 - 655
Target Start/End: Complemental strand, 19629069 - 19629033
Alignment:
| Q |
619 |
gttacattcaatttcttccatttttcaaattattatc |
655 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||| |
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| T |
19629069 |
gttacattcaattacttccatttttcaaagtattatc |
19629033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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