View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-12 (Length: 430)
Name: NF2085-Insertion-12
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-12 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 430
Target Start/End: Complemental strand, 23628808 - 23628390
Alignment:
| Q |
8 |
ctttcgcctgtaaaacaaaaaacaagtgtacttcacatcaataaagacaacatattagacttgctacttaatcctatgaaattgatttgcaaccaaatta |
107 |
Q |
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| T |
23628808 |
ctttcgcctgtaaaacaaaaaacaagtgtacttcacatcaataaagacaacatgttagacttgctacttaatcctatgaaattgatttgcaaccaaatta |
23628709 |
T |
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| Q |
108 |
aagacaaacaaaataaaatttgtcctaatttccttgtactaaannnnnnnnnnnnnnnnnnnnataaatgtaccctattaatattatttaataacaaaat |
207 |
Q |
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| T |
23628708 |
aagacaaacaaaataaaatttgtcctaatttccttgtactaaattttttattcttttagttttataaatgtaccc----aatattatttaataacaaaat |
23628613 |
T |
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| Q |
208 |
tggaaattcatttcatttttgttagtatgttgattccattgtttgaaacnnnnnnnattttcatgtcatagagtatgtaccaagatatggaaagtcgagt |
307 |
Q |
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| T |
23628612 |
tggaaattcatttcatttttgttagtatgttgattccattatttgaaactttttttattttcatgtcatagagaatgtaccaagatatggaaagtcgagt |
23628513 |
T |
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| Q |
308 |
agaaaatgcatccaagttgggtaaagtaccagaagaaacatactcaaagcataaggagttttctgaatggggttcatattcatctaaacgtgatcatgac |
407 |
Q |
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| T |
23628512 |
agaaaatgcatccaagttgggtaaagtaccagaagaaacatactcaaagcataaggagttttctgaatggggttcatattcatctaaacgtgaccatgac |
23628413 |
T |
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| Q |
408 |
acaattcttcatgtatgtatcct |
430 |
Q |
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| T |
23628412 |
acaattcttcatgtatgtatcct |
23628390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 264 - 430
Target Start/End: Complemental strand, 23641165 - 23640999
Alignment:
| Q |
264 |
attttcatgtcatagagtatgtaccaagatatggaaagtcgagtagaaaatgcatccaagttgggtaaagtaccagaagaaacatactcaaagcataagg |
363 |
Q |
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| T |
23641165 |
atttccatgtaatagagaatgtaccaagatatggaaagtcgagtagaaaatgcatccaagttgggtaaagtaccagaagaaacatactcaaagcataagg |
23641066 |
T |
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| Q |
364 |
agttttctgaatggggttcatattcatctaaacgtgatcatgacacaattcttcatgtatgtatcct |
430 |
Q |
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| T |
23641065 |
agttttctgaatggggttcatattcatctaaacgtgaccatgacacaattcttcatgtatgtatcct |
23640999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 353 - 418
Target Start/End: Complemental strand, 23654956 - 23654891
Alignment:
| Q |
353 |
aaagcataaggagttttctgaatggggttcatattcatctaaacgtgatcatgacacaattcttca |
418 |
Q |
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| T |
23654956 |
aaagcataagggattttctcaatgggattcatattcatctaaacgtgaccatgacacaattcttca |
23654891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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