View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-13 (Length: 427)
Name: NF2085-Insertion-13
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-13 |
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Alignment Details
Target: chr6 (Bit Score: 374; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Original strand, 22686987 - 22687404
Alignment:
| Q |
8 |
tcaaatgcaacaatatcatgatacatcaaaatcaactcatcgaaaaacacacgaatctccaccgcagttttctgatatgccgttttttagtatatcctgc |
107 |
Q |
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| T |
22686987 |
tcaaatgcaacaatatcatgatacatcaaaatcaactcatcgaaaaacacaagaatctctaccgcagttttctgatatgccgttttttagtatatcctgc |
22687086 |
T |
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| Q |
108 |
aaaacaggaaatctgaagactttgcttcttcctggtggaaaagattccgaattcgagtcagcaatgagaaaaagaatcatgaattatcttaacatatcgg |
207 |
Q |
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| T |
22687087 |
aaaacaggaaatttgaagactttgcttcttcatggtggaaaagattccgaatttgagtcagcaatgagaaaaagaatcatgaattatcttaacatatcgg |
22687186 |
T |
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| Q |
208 |
aaaacgattacttcatggttttcactgctaatagaacatcggctttcaaacttatagcagattgttacaattttcaaaaaagtagaaagcttttaacagt |
307 |
Q |
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| T |
22687187 |
aaaacgattacttcatggttttcactgctaatagaacatcggctttcaaacttgtagcagattgttacaattttcaaaaaagtagaaagcttttaacagt |
22687286 |
T |
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| Q |
308 |
ttatgaccatgaaagtgaagccgtggaagcgatgattagttcgtccgaaaaacaaggagcaaaagctatgtcagcagagttttcatggccaaggctgaga |
407 |
Q |
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| T |
22687287 |
ttatgaccatgaaagtgaagctgtggaagcgatgattagctcgtccgaaaaacgaggagcaaaagctatgtcagcagagttttcatggccaaggctgaga |
22687386 |
T |
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| Q |
408 |
attcatccaacaaagttg |
425 |
Q |
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| T |
22687387 |
attcaatcaacaaagttg |
22687404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 8 - 425
Target Start/End: Complemental strand, 22752081 - 22751664
Alignment:
| Q |
8 |
tcaaatgcaacaatatcatgatacatcaaaatcaactcatcgaaaaacacacgaatctccaccgcagttttctgatatgccgttttttagtatatcctgc |
107 |
Q |
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| T |
22752081 |
tcaaatgcaacaatatcatgatacatcaaaatcaactcatcgaaaaacacaagaatctctaccgcagttttctgatatgccgttttttagtatatcctgc |
22751982 |
T |
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| Q |
108 |
aaaacaggaaatctgaagactttgcttcttcctggtggaaaagattccgaattcgagtcagcaatgagaaaaagaatcatgaattatcttaacatatcgg |
207 |
Q |
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| T |
22751981 |
aaaacaggaaatttgaagactttgcttcttcatggtggaaaagattccgaatttgagtcagcaatgagaaaaagaatcatgaattatcttaacatatcgg |
22751882 |
T |
|
| Q |
208 |
aaaacgattacttcatggttttcactgctaatagaacatcggctttcaaacttatagcagattgttacaattttcaaaaaagtagaaagcttttaacagt |
307 |
Q |
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| T |
22751881 |
aaaacgattacttcatggttttcactgctaatagaacatcggctttcaaacttgtagcagattgttacaattttcaaaaaagtagaaagcttttaacagt |
22751782 |
T |
|
| Q |
308 |
ttatgaccatgaaagtgaagccgtggaagcgatgattagttcgtccgaaaaacaaggagcaaaagctatgtcagcagagttttcatggccaaggctgaga |
407 |
Q |
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| T |
22751781 |
ttatgaccatgaaagtgaagctgtggaagcgatgattagctcgtccgaaaaacgaggagcaaaagctatgtcagcagagttttcatggccaaggctgaga |
22751682 |
T |
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| Q |
408 |
attcatccaacaaagttg |
425 |
Q |
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| T |
22751681 |
attcaatcaacaaagttg |
22751664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 77 - 421
Target Start/End: Original strand, 45957546 - 45957890
Alignment:
| Q |
77 |
ttctgatatgccgttttttagtatatcctgcaaaacaggaaatctgaagactttgcttcttcctggtggaaaagattccgaattcgagtcagcaatgaga |
176 |
Q |
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||||||||| || || |||||||| |||| |||||| |||||| |||||||||| | |||| ||| || ||||| || ||||| ||||| |||||||| |
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| T |
45957546 |
ttctgatattcccttctttagtatttcctacaaaactggaaatttgaagactttattgcttcatggagggaaagagtcagaatttgagtctgcaatgagg |
45957645 |
T |
|
| Q |
177 |
aaaagaatcatgaattatcttaacatatcggaaaacgattacttcatggttttcactgctaatagaacatcggctttcaaacttatagcagattgttaca |
276 |
Q |
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| T |
45957646 |
aaaaggataatgaagtttcttaacatttctgaaaatgattatttcatggttttcacagcaaatagaacatcagctttcaaacttgtagcagattcatatc |
45957745 |
T |
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| Q |
277 |
attttcaaaaaagtagaaagcttttaacagtttatgaccatgaaagtgaagccgtggaagcgatgattagttcgtccgaaaaacaaggagcaaaagctat |
376 |
Q |
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| T |
45957746 |
catttcaatcttgtaagaagcttctgacagtttatgactatgagagtgaagcagtggaagcaatgattagtacttcagaaaatagaggtgctaaatctat |
45957845 |
T |
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| Q |
377 |
gtcagcagagttttcatggccaaggctgagaattcatccaacaaa |
421 |
Q |
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|||||| || || ||||||||||| || |||||||| ||||||| |
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| T |
45957846 |
gtcagctgaattctcatggccaagactaagaattcagtcaacaaa |
45957890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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