View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-14 (Length: 270)
Name: NF2085-Insertion-14
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-14 |
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| [»] scaffold0041 (1 HSPs) |
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Alignment Details
Target: scaffold0041 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: scaffold0041
Description:
Target: scaffold0041; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 76777 - 77015
Alignment:
| Q |
8 |
atgacatctttattattctgcttctatagtgaatttcagtttttgtaaggctatatactctgtatttggtcatgaattgnnnnnnncattccatcatata |
107 |
Q |
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| T |
76777 |
atgacatctttattattctgcttctatagtgaatttcagtttttgtaaggttatatactctgtatttggtcatgaattgtttttttcattccatcat--- |
76873 |
T |
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| Q |
108 |
catacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttgtttcatattaaggtttttagttaagcatcactctgaacc |
207 |
Q |
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| T |
76874 |
-atacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttgtttcatattaaggtttttagttaagcatcactctgaacc |
76972 |
T |
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| Q |
208 |
aaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
250 |
Q |
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| T |
76973 |
aaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
77015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 40889507 - 40889269
Alignment:
| Q |
8 |
atgacatctttattattctgcttctatagtgaatttcagtttttgtaaggctatatactctgtatttggtcatgaattgnnnnnnncattccatcatata |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| |
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| T |
40889507 |
atgacatctttattattctgcttctatagtgaatttcagtttttgtaaggttatatactctgtatttggtcatgaattgtttttttcattccatcat--- |
40889411 |
T |
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| Q |
108 |
catacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttgtttcatattaaggtttttagttaagcatcactctgaacc |
207 |
Q |
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| T |
40889410 |
-atacattaagcccaaaaacattaattaaagtgtttaattaaattggaatctccatttttgtttcatattaaggtttttagttaagcatcactctgaacc |
40889312 |
T |
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| Q |
208 |
aaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
250 |
Q |
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| T |
40889311 |
aaacatttgtacggactaaaaaatgctgtctgttgaagaatca |
40889269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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