View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-17 (Length: 189)
Name: NF2085-Insertion-17
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-17 |
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| [»] chr7 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 8 - 189
Target Start/End: Complemental strand, 4196382 - 4196201
Alignment:
| Q |
8 |
aaatcttcatgtgtgagcttgaacgtagcacgaagagagtcttcgagctttggttcaaaagctaaaatcttcaagcatctttcgtttcctttttcatttg |
107 |
Q |
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| T |
4196382 |
aaatcttcacgtgtgagcttgaacgtagcacgaagagagtcttcgaggtttggttcaaaagctaaaatcttcaagcatctttcgtttcctttttcatttg |
4196283 |
T |
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| Q |
108 |
ggaacatgttggttatgagatctctccagttatttgtgaacttatcactaagttcatctagatctttcacgatattcctatc |
189 |
Q |
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| T |
4196282 |
ggaacatgttggttatgaactctctccaattatttgtgaacttatcaccaagttcatctagatctttcacgatattcctatc |
4196201 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 8 - 160
Target Start/End: Complemental strand, 4234125 - 4233973
Alignment:
| Q |
8 |
aaatcttcatgtgtgagcttgaacgtagcacgaagagagtcttcgagctttggttcaaaagctaaaatcttcaagcatctttcgtttcctttttcatttg |
107 |
Q |
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| T |
4234125 |
aaatcttcacgtgtgagcttgaatgtagaacgaacatagtcttcgagttttggttcaaaaggtaaaatcttcaagcttctttcatttcctttttcatttg |
4234026 |
T |
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| Q |
108 |
ggaacatgttggttatgagatctctccagttatttgtgaacttatcactaagt |
160 |
Q |
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| T |
4234025 |
ggaacatcatggttattatctccgtccagttttttgtgaacttatcaccaagt |
4233973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 8 - 111
Target Start/End: Complemental strand, 4251141 - 4251038
Alignment:
| Q |
8 |
aaatcttcatgtgtgagcttgaacgtagcacgaagagagtcttcgagctttggttcaaaagctaaaatcttcaagcatctttcgtttcctttttcatttg |
107 |
Q |
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|||||||||||| ||||||| || |||||||||| |||||||||||| | ||||||||| | |||||||| |||| ||| || |||||||||||| ||| |
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| T |
4251141 |
aaatcttcatgtttgagcttaaaagtagcacgaacagagtcttcgagttgtggttcaaatgggaaaatctttaagcttctatcatttcctttttcacttg |
4251042 |
T |
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| Q |
108 |
ggaa |
111 |
Q |
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|||| |
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| T |
4251041 |
ggaa |
4251038 |
T |
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