View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-2 (Length: 902)
Name: NF2085-Insertion-2
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-2 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 845; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 845; E-Value: 0
Query Start/End: Original strand, 7 - 902
Target Start/End: Original strand, 8020828 - 8021724
Alignment:
| Q |
7 |
attaagttgttatgattacttacagaagtgcttttgtcgataggcttttataaagctcacatgtcttgttctttagtctaatctattatcatgatttttt |
106 |
Q |
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| T |
8020828 |
attaagttgttatgattacttacaaaagtgcttttgtcgataagcttttataaagctcacatgtcttgttctttaatctaatctattatcatgatttttt |
8020927 |
T |
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| Q |
107 |
gttattctgctagcttaaggaagtatgaactttatttttacttttccttttgaaattacagccatgaagaagcgcggtcgcgaatccatcttacatgata |
206 |
Q |
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| T |
8020928 |
gttattctgcttgcttaaagaagtatgaactttatttttacttttccttttgaaattacagccatgaagaagcgcggtcgcgaatccatcttacatgata |
8021027 |
T |
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| Q |
207 |
aagaaaaggtgaaccataagatcgatggaatagaatctctagaaaaggataatgtaaagaagtcaaaagtgagtattgtaataagacatttgtggtttta |
306 |
Q |
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| T |
8021028 |
aagaaaaggtgaaccataagatcgatggaatagaatctctagaaaaggataatgtaaagaagtcaaaagtgagtattgtaataagacatttgtggtttta |
8021127 |
T |
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| Q |
307 |
aaaacttgaccttttgctttgtcttctaagtatttgtttttcacctttaacttggaattttgcattttgtagaaacatgaaattggccaaaactggtccc |
406 |
Q |
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| T |
8021128 |
aaaacttgaccttttgctttgtcttctaagtatttgtttttcacctttaacttggaattttgcattttgtagaaacatgaaattggccaaaactggtccc |
8021227 |
T |
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| Q |
407 |
aaagaggagtttttggttccatcacaaaagatgaggaagaggtagctgagacactgtatgccttggctgcaatgtttcctcgcagcggctccaatgatat |
506 |
Q |
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| T |
8021228 |
aaagaggagtttttggttccatcacaaaagatgaggaagaggtagctgagacactgtatgccttggctgcaatgtttcctcgcagcggctccaatgatat |
8021327 |
T |
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| Q |
507 |
tatcaaggaacttgatggagaacctttcatggaaaactcctcagttctgcaggacatgaaggagaaggttaatgcttctcttgaaggttattttcaccct |
606 |
Q |
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| T |
8021328 |
tatcaaggaacttgatggagaacctttcatggaaaactcctcagttctgcaggacatgaaggagaaggttaatgcttctcttgaaggttattttcaccct |
8021427 |
T |
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| Q |
607 |
tctatattatataagagattaattttaatgcaccatcagcataaaactttttaaactgtcaaccaatnnnnnnnnttattatgtatatgacttttaaggt |
706 |
Q |
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| T |
8021428 |
tctatattatataagagattaattttaatgcaccatcagcataaaactttttaaactgtcaaccaataaaaaaaattattatgtatatgacttttaaggt |
8021527 |
T |
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| Q |
707 |
agatctagttaaagtcaaatatttgtaatgattcaaggataatgattaaactgacagtataaaaattcattacactgacagtaaatatcaactacattca |
806 |
Q |
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| T |
8021528 |
agatctagttaaagtcaaatatttgtaatgattcaaggataatgattaaactgacagtataaaaattcattacactgacagtaaatatcaactacattca |
8021627 |
T |
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| Q |
807 |
ttacataacgattattctatcttacacaatacttttctttattcattaactcgttcatttcgatttcccattttctttt-gcatatattctagcctc |
902 |
Q |
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| T |
8021628 |
ttacataacgattattctatcttacacaatacttttctttattcattaactcgttcatttcgatttcccattttcttttggcatatattctagcctc |
8021724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 425 - 486
Target Start/End: Complemental strand, 53097775 - 53097714
Alignment:
| Q |
425 |
ccatcacaaaagatgaggaagaggtagctgagacactgtatgccttggctgcaatgtttcct |
486 |
Q |
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|||| |||||||||||| ||||||| || |||||||| ||||| ||||||| |||||||||| |
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| T |
53097775 |
ccataacaaaagatgagcaagaggttgcagagacactctatgctttggctggaatgtttcct |
53097714 |
T |
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