View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2085-Insertion-3 (Length: 904)
Name: NF2085-Insertion-3
Description: NF2085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2085-Insertion-3 |
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| [»] scaffold0743 (1 HSPs) |
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| [»] scaffold1104 (1 HSPs) |
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Alignment Details
Target: scaffold0743 (Bit Score: 766; Significance: 0; HSPs: 1)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 766; E-Value: 0
Query Start/End: Original strand, 8 - 893
Target Start/End: Complemental strand, 6152 - 5268
Alignment:
| Q |
8 |
gatcaaacccttgactcagctcttacacaaaggttcttttgatctctctccgtatatgaaaaaagaagtttgtagatatggtattcaaatctttcaattg |
107 |
Q |
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| T |
6152 |
gatcaaacccatgactcagctcttacacaaaggttcttttgatctctctccgtatatgaaaaaaggagtttatagatatggtattcaaatctttcaattg |
6053 |
T |
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| Q |
108 |
atgcatcgtcactcatgtgagttatttagttctcgatttcttcattttcaaaagagtctttcaatcggggaagtgaatgcttggattaattttttggtta |
207 |
Q |
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| T |
6052 |
atgcatcgtcactcaggtgagttatttagttctcgatttcttcattttcaaaagagtctttcaatcggggaagtgaatgcttggattaattttttggtta |
5953 |
T |
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| Q |
208 |
cgaaaaagcagtcgctgaaaaacctaagcctagaatgtatagttgaatatggagaagctgcagatgaaaatgaactttgtaacccacacttctcacaagg |
307 |
Q |
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| T |
5952 |
caaaaaagaagtcgctgaaaaatctaagcctagaatgtatagttgaatatggagaagctgcagatgaaaatgaactttgtaacccacacttctcacaagg |
5853 |
T |
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| Q |
308 |
aatttttcattgtctacattcacttgagttgataaactatacaattgattgttggtatgcatttgagggttgtcataacctcaaaatccttaaacttgag |
407 |
Q |
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| T |
5852 |
aatttttcattgtctacattcacttgagttgataaactatacaattgattgttggtatgcatttgagggttgtcataacctcaaaatccttaaactagag |
5753 |
T |
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| Q |
408 |
aggatacacttggatggtgaagtattgattgggatcctagagaattgtttggttgtggaaacttttagcctacttaagtgcactggattctccaaactta |
507 |
Q |
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| T |
5752 |
aggatacacttggatggtgaagtattgattgggattctagagaattgtttggttgtggaaacttttagcctaattaagtgcactggattctccaaactta |
5653 |
T |
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| Q |
508 |
tgattaagaaatcaacacttaaagttttacgactccaagatctatgtgtggatcatctagaaatcactgcccaaaatcttgatgatctatttcttgattc |
607 |
Q |
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| T |
5652 |
tgattaagaaatcaacactaaaaattttacgactccaagatctatgtgtggatcatctagaaatcactgcccaaaatcttgatgatctatttcttgattc |
5553 |
T |
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| Q |
608 |
tataacttgtcctgtgaagaatatatccannnnnnnaccaaggttgcacacttttgaaaatcattggtactcgatgctttcaattgaagacaggaaatgt |
707 |
Q |
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| T |
5552 |
tataacttgtcctgtgaagaatatatccattttttcaccaaggttgcacacttttgaaaatcattggtactcgatgctttcaattgaagacaggaaatgt |
5453 |
T |
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| Q |
708 |
gtgatgaaaacaaatgagattctcgcctacttcattgacctctgggtaagttctctattaatgtttttaaaaacgtcttttgaatggcaacatttttatg |
807 |
Q |
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| T |
5452 |
gtgatgaaaacaaatgagattcttgcctacttcattgacctctgggtaagttctctattaatgttttt-aatacatcttttgcatggcaacatttttatg |
5354 |
T |
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| Q |
808 |
tacgtgatttgagtatgaggaatgatatttatacgatcatttttatgacaacttttggaac-attttttgttccctcttaatttgaa |
893 |
Q |
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| T |
5353 |
tacgtgatttgagtatgaggaatgatatttatacgatcatttttatgacaa-atttggaacaactttttcttccctcttaatttgaa |
5268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1104 (Bit Score: 119; Significance: 3e-60; HSPs: 1)
Name: scaffold1104
Description:
Target: scaffold1104; HSP #1
Raw Score: 119; E-Value: 3e-60
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 293 - 527
Alignment:
| Q |
19 |
tgactcagctcttacacaaaggttcttttgatctctctccgtatatgaaaaaagaagtttgtagatatggtattcaaatctttcaattgatgcatcgtca |
118 |
Q |
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| T |
293 |
tgactcaactcttacacaaaggttcatttgatctctctccatatatgaaaaatggagttcttaaatatggtattcaatccttttaattgatgtatcgtca |
392 |
T |
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| Q |
119 |
ctcatgtgagttatttagttctcgatttcttcattttcaaaagagtctttcaatcggggaagtgaatgcttggattaattttttggttacgaaaaagcag |
218 |
Q |
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| T |
393 |
cttaagtgagttatctacttctcgatttcatcattttaaaaagaatctttcaatcggggaagtgaatgcttagattaattttctgaatacaaaaaagaag |
492 |
T |
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| Q |
219 |
tcgctgaaaaacctaagcctagaatgtatagttga |
253 |
Q |
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| T |
493 |
tcgctgaaaaatctaagccttaaatgtataattga |
527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 822 - 868
Target Start/End: Original strand, 28501445 - 28501490
Alignment:
| Q |
822 |
atgaggaatgatatttatacgatcatttttatgacaacttttggaac |
868 |
Q |
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| T |
28501445 |
atgaggaatgatatttatacaaccattttt-tgacaacttttggaac |
28501490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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